CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g18980

Gene name peroxidase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At2g18980 816415 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.60 75.7 At3g63470 825522 scpl40 (serine carboxypeptidase-like 40) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB S.X. H.G.
0.53 68.6 At1g27140 839603 ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.50 65.3 At3g01220 821232 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity. S.X. H.G.
0.46 59.8 At4g28650 828983 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.43 55.3 At5g15150 831367 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem. S.X. H.G.
0.40 50.8 At1g67330 843054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB S.X. H.G.
0.40 50.8 At3g50640 824227 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.36 43.6 At2g25810 817123 TIP4 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
87.7 99.9 GSM252692 Section of Root from 270 mm to 340 mm harvested immediately rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
80.1 99.9 GSM266665 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
80.0 99.9 GSM266670 Arabidopsis, root cells, cortex, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
65.1 99.8 GSM226536 L6SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
64.2 99.8 GSM184835 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5 GSE7639 Expression analysis of root developmental zones after treatment with salt
64.0 99.8 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
58.0 99.8 GSM184891 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
47.9 99.8 GSM266662 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
47.4 99.8 GSM184889 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
46.1 99.8 GSM266671 Arabidopsis, root cells, cortex, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 2e-86 319 At4g30170 829140 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB C.G. S.X.
0.06 5e-7 56 At5g67400 836876 peroxidase 73 (PER73) (P73) (PRXR11) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO C.G. S.X.
0.03 8e-6 52 At1g49570 841381 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB C.G. S.X.
0.03 5e-4 46 At5g58400 835953 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM C.G. S.X.
0.11 8e-3 42 At4g37520 829907 peroxidase 50 (PER50) (P50) (PRXR2) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOM C.G. S.X.
0.02 8e-3 42 At3g49960 824158 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO C.G. S.X.
0.06 8e-3 42 At1g05260 837028 RCI3 (RARE COLD INDUCIBLE GENE 3) Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings. C.G. S.X.
0.11 3e-2 40 At4g37530 829908 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to salt stress;C:endomembrane system;PFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 1e-5 52 Glycine max Gma.4886.2.S1_at AW234624 - - 6e-6 At2g18980 peroxidase, putative C.G. S.X.
0.05 2e-1 36 Hordeum vulgare Contig7082_at Contig7082 - - 1e-4 At5g15180 peroxidase, putative C.G. S.X.
0.05 6e-5 50 Oryza sativa Os06g0521200 9634.m03088 - Haem peroxidase, plant/fungal/bacterial familyprotein 1e-4 At3g50990 electron carrier/ heme binding / peroxidase C.G. S.X.
0.05 5e-8 59 Populus trichocarpa Ptp.7068.1.S1_at DN487969 hypothetical protein - 2e-7 At4g30170 peroxidase, putative C.G. S.X.
0.04 2e-3 44 Triticum aestivum TaAffx.128529.2.S1_at BJ280134 - - 1e-3 At2g18980 peroxidase, putative C.G. S.X.
0.03 6e-1 34 Vitis vinifera 1615126_at CB921167 hypothetical protein LOC100265768 - 3e-11 At4g32640 protein binding / zinc ion binding C.G. S.X.
0.02 8e-1 34 Zea mays Zm.6907.1.A1_at AI065607 - - 1e+1 At5g47630 mtACP3 (mitochondrial acyl carrier protein 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00413 Peroxidase, class III

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00360 Phenylalanine metabolism
00680 Methane metabolism
00940 Phenylpropanoid biosynthesis
01061 Biosynthesis of phenylpropanoids
01100 Metabolic pathways
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