CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g18810

Gene name DNA binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g18810 816396 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P S.X. H.G.
0.78 88.6 At5g44470 834474 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.69 82.9 At4g21950 828284 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At1g72080 843539 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFPBVA S.X. H.G.
0.63 78.1 At1g59630 842253 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.63 78.1 At4g08450 826403 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;BPOMFVA S.X. H.G.
0.61 76.7 At2g32050 817765 cell cycle control protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.60 75.7 At1g29570 839834 zinc finger protein-related F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVA S.X. H.G.
0.58 73.8 At2g24410 816977 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.58 73.8 At5g37860 833764 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;POBFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
465.8 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
340.8 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
334.4 100.0 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
306.3 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
283.1 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
276.7 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
271.6 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
264.5 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
262.6 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
255.6 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.77 2e-175 615 At2g31720 817728 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P C.G. S.X.
0.36 1e-37 157 At2g31862 2745575 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-2 40 At4g23360 828435 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB C.G. S.X.
0.03 9e-2 38 At5g02600 831874 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:chloroplast;POMFVB C.G. S.X.
0.01 1e+0 34 At5g37570 833735 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFM C.G. S.X.
0.02 1e+0 34 At5g46290 834671 KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I) 3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA, C.G. S.X.
0.01 1e+0 34 At1g19835 838571 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e+0 32 Glycine max PsAffx.C5000015_at PsAffx.C5000015 - - 4e-4 At3g29020 MYB110 (myb domain protein 110) C.G. S.X.
0.03 1e+1 30 Hordeum vulgare HR01G08u_at HR01G08u - - 1e+1 At5g03010 kelch repeat-containing protein C.G. S.X.
0.04 3e+0 34 Oryza sativa OsAffx.9637.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.9537.1.S1_at DN499542 - - 8e-11 At5g28300 trihelix DNA-binding protein, putative C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.7518.1.S1_at CA657525 - - 3e+0 At5g02790 In2-1 protein, putative C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1620500_at CB349662 hypothetical protein LOC100256536 - 1e-3 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.02 1e-1 36 Zea mays Zm.4404.1.S1_at CF056620 hypothetical protein LOC100273570 - 8e-9 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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