CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g18680

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At2g18680 816383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO S.X. H.G.
0.29 30.3 At3g13950 820608 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P S.X. H.G.
0.22 17.5 At5g13200 831159 GRAM domain-containing protein / ABA-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.17 10.2 At2g26560 817197 PLA2A (PHOSPHOLIPASE A 2A) encodes a lipid acyl hydrolase with wide substrate specificity that accumulates upon infection by fungal and bacterial pathogens. Protein is localized in the cytoplasm in healthy leaves, and in membranes in infected cells. S.X. H.G.
0.10 3.4 At3g56710 824838 SIB1 (SIGMA FACTOR BINDING PROTEIN 1) Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
62.9 99.8 E-MEXP-807-raw-cel-1173273252
53.1 99.8 GSM134369 St.Clair_1-30_433_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
50.5 99.8 GSM134432 St.Clair_1-57_377_Kin-0_0.02%-silwet_Rep3_ATH1 GSE5757 Expression Level Polymorphism Project (ELP) - Kin-0
47.6 99.8 E-TABM-62-raw-cel-720974181
45.9 99.8 E-MEXP-173-raw-cel-357965384
43.8 99.8 E-MEXP-173-raw-cel-357965418
41.2 99.8 E-MEXP-807-raw-cel-1173273170
41.1 99.8 E-MEXP-173-raw-cel-357965350
36.4 99.7 E-MEXP-546-raw-cel-863289532
35.6 99.7 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 3e-85 315 At2g18690 816384 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PB C.G. S.X.
0.01 1e-1 38 At5g44690 834498 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
0.01 1e-1 38 At2g03140 814843 CAAX amino terminal protease family protein F:unknown;P:proteolysis;C:nucleus;MBOFPVA C.G. S.X.
0.01 4e-1 36 At1g08130 837333 ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus. C.G. S.X.
0.02 2e+0 34 At5g56420 835743 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max Gma.4922.1.S1_at AW781988 - - 8e-12 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig15105_at Contig15105 - - 8e+0 At5g53030 unknown protein C.G. S.X.
0.02 3e+0 34 Oryza sativa OsAffx.2641.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.70091.1.A1_at CV232235 - - 2e-1 At1g30475 - C.G. S.X.
0.04 2e+0 34 Triticum aestivum TaAffx.22704.1.S1_at CA746306 - - 4e-1 At2g18680 unknown protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1620704_at CF404231 hypothetical protein LOC100243493 - 1e+0 At4g28730 glutaredoxin family protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.17794.1.S1_at CK371286 hypothetical protein LOC100274149 - 6e-6 At4g18230 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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