CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g18490

Gene name zinc finger (C2H2 type) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g18490 816364 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PO S.X. H.G.
1.00 100.0 At1g02980 839415 CUL2 (CULLIN 2) encodes an Arabidopsis cullin S.X. H.G.
0.91 95.6 At2g27700 817316 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein F:translation factor activity, nucleic acid binding, GTP binding, GTPase activity;P:unknown;C:unknown;BOMFAP S.X. H.G.
0.91 95.6 At5g10230 830887 ANNAT7 (ANNEXIN ARABIDOPSIS 7) Encodes a calcium-binding protein annexin (AnnAt7). S.X. H.G.
0.89 94.6 At5g17470 831613 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB S.X. H.G.
0.63 78.1 At1g72580 843590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1212.7 100.0 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
1101.6 100.0 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
653.1 100.0 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
622.7 100.0 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
503.6 100.0 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
425.1 100.0 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
406.4 100.0 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
65.4 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.9 99.4 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.7 99.3 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.60 3e-91 335 At2g15740 816068 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;POM C.G. S.X.
0.49 2e-46 186 At5g42640 834272 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PM C.G. S.X.
0.13 5e-19 95 At5g22990 832363 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMO C.G. S.X.
0.01 4e-1 36 At5g07760 830669 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPBOFVA C.G. S.X.
0.02 4e-1 36 At5g22920 832356 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBA C.G. S.X.
0.01 2e+0 34 At5g37920 833771 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.01 2e+0 34 At3g11964 820370 RNA binding F:RNA binding;P:mRNA processing, RNA processing;C:nucleolus, plasma membrane;BOMFPA C.G. S.X.
0.01 2e+0 34 At1g08720 837393 EDR1 (ENHANCED DISEASE RESISTANCE 1) enhanced disease resistance 1 (EDR1) confers resistance to powdery mildew disease caused by the fungus Erysiphe cichoracearum C.G. S.X.
0.02 6e+0 32 At5g43700 834390 ATAUX2-11 (AUXIN INDUCIBLE 2-11) Auxin inducible protein similar to transcription factors. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max Gma.992.1.S1_at BE657751 - - 2e-1 At5g04210 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.04 2e-1 36 Hordeum vulgare Contig4415_at Contig4415 - - 3e-1 At2g18490 zinc finger (C2H2 type) family protein C.G. S.X.
0.03 3e+0 34 Oryza sativa Os06g0362100 AK121132.1 - Conserved hypothetical protein 1e+0 At1g60830 U2 snRNP auxiliary factor large subunit, putative C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.249.891.S1_at AJ773214 - - 7e-1 At3g43880 unknown protein C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.108019.1.S1_at CA692373 - - 2e-1 At2g18490 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 4e-1 34 Vitis vinifera 1618655_at CF208051 hypothetical protein LOC100261271 - 5e-47 At5g23550 - C.G. S.X.
0.03 4e-2 38 Zea mays Zm.16252.1.A1_at CD526604 hypothetical protein LOC100217300 - 1e-1 At2g18490 zinc finger (C2H2 type) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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