CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g18370

Gene name protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At2g18370 816352 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. S.X. H.G.
0.96 97.3 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. S.X. H.G.
0.92 96.0 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.92 96.0 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.89 94.6 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.88 94.0 At5g37690 833748 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.86 93.1 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB S.X. H.G.
0.85 92.4 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.77 88.0 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.70 83.5 At3g06390 819813 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
68.2 99.9 GSM131305 AtGen_6-2621_Osmoticstress-Roots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
65.5 99.8 GSM133717 Urwin_A-1-Urwin-Con_SLD GSE5724 Plant gene expression associated with susceptibility to nematodes
61.5 99.8 GSM131306 AtGen_6-2622_Osmoticstress-Roots-24.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
54.0 99.8 GSM184934 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
53.7 99.8 GSM184935 Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
53.3 99.8 GSM184936 Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
52.0 99.8 GSM142675 SF002_ATH1_A6-Fille-WT+dex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
50.2 99.8 GSM142669 SF002_ATH1_A7-Fille-ANGR4-12nodex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
50.1 99.8 E-MEXP-791-raw-cel-1122937623
47.7 99.8 GSM131326 AtGen_6-3522_Saltstress-Roots-12.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-2 38 At3g49260 824087 iqd21 (IQ-domain 21) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFB C.G. S.X.
0.01 3e+0 32 At5g41150 834117 UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) Confers resistance to UV radiation. Homolog of the human xeroderma pigmentosum group F DNA repair and yeast Rad1 proteins C.G. S.X.
0.03 3e+0 32 At5g05987 830485 PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPFO C.G. S.X.
0.01 3e+0 32 At4g20850 827833 TPP2 (TRIPEPTIDYL PEPTIDASE II) Tripeptidyl Peptidase II. Ser protease that assembles into a large oligomeric complex containing two proteins of 153 and 142 kD that are derived from a single TPP2 gene, with the smaller version missing part of the C-terminal end. Not essential, based on the lack of phenotype of a T-DNA disruption mutant. C.G. S.X.
0.01 3e+0 32 At4g19380 827679 alcohol oxidase-related F:electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:unknown;C:cellular_component unknown;BOFMPA C.G. S.X.
0.01 3e+0 32 At1g48870 841309 WD-40 repeat family protein F:protein phosphatase type 2A regulator activity, signal transducer activity;P:signal transduction;C:protein phosphatase type 2A complex, heterotrimeric G-protein complex;MFBOPA C.G. S.X.
0.00 3e+0 32 At1g70320 843368 UPL2 (UBIQUITIN-PROTEIN LIGASE 2) encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Glycine max Gma.12824.1.A1_at CD391555 - - 3e+0 At2g29450 ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5) C.G. S.X.
0.03 5e+0 30 Hordeum vulgare HVSMEb0004D21r2_at HVSMEb0004D21r2 - - 4e+0 At2g29530 mitochondrial import inner membrane translocase (TIM10) C.G. S.X.
0.03 8e-2 38 Oryza sativa Os04g0174900 AK063481.1 - Phospholipase/Carboxylesterase family protein 3e-1 At3g15650 phospholipase/carboxylesterase family protein C.G. S.X.
0.04 6e-2 38 Populus trichocarpa Ptp.7129.1.S1_at CV274045 - - 1e-1 At2g18370 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.05 1e+1 30 Triticum aestivum TaAffx.58678.1.S1_at CA617348 - - 2e+0 At4g01671 unknown protein C.G. S.X.
0.04 8e-1 32 Vitis vinifera 1620024_s_at CF511252 hypothetical protein LOC100245587 - 4e-9 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related C.G. S.X.
0.04 2e+1 28 Zea mays ZmAffx.577.1.A1_at AI714809 - - 2e+0 At1g80745 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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