CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g18180

Gene name SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g18180 816331 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative F:transporter activity;P:transport;C:unknown;MPFO S.X. H.G.
0.55 70.6 At1g79860 844325 ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12) Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth Growth. S.X. H.G.
0.44 57.2 At3g01630 819891 - F:unknown;P:unknown;C:unknown;PBOFAM S.X. H.G.
0.40 50.8 At5g18910 832009 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:peroxisome;MPOBFVA S.X. H.G.
0.38 46.7 At4g07960 826301 ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12) encodes a gene similar to cellulose synthase S.X. H.G.
0.36 43.6 At1g61290 842423 SYP124 (SYNTAXIN OF PLANTS 124) member of SYP12 Gene Family S.X. H.G.
0.34 39.8 At5g25340 832606 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MPO S.X. H.G.
0.29 30.3 At5g39400 833936 PTEN1 F:phosphatase activity;P:N-terminal protein myristoylation, pollen development;C:cellular_component unknown;MOFPBA S.X. H.G.
0.25 22.6 At3g20530 821599 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.21 15.8 At3g02810 821236 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
265.8 100.0 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
242.0 100.0 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
218.4 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
201.5 100.0 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
197.4 100.0 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
183.8 100.0 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
154.2 99.9 E-MEXP-1138-raw-cel-1432772586
152.9 99.9 E-MEXP-1138-raw-cel-1432772650
152.9 99.9 E-MEXP-1138-raw-cel-1432773002
137.5 99.9 E-MEXP-1138-raw-cel-1432772554
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.71 0 1080 At4g36490 829801 SFH12 (SEC14-LIKE 12) F:phosphatidylinositol transporter activity, transporter activity;P:transport;C:unknown;MPFO C.G. S.X.
0.34 4e-86 319 At2g21540 816693 SFH3 (SEC14-LIKE 3) F:phosphatidylinositol transporter activity;P:flower development, transport;C:intracellular;MPFO C.G. S.X.
0.31 1e-42 174 At4g34580 829610 COW1 (CAN OF WORMS1) Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth. C.G. S.X.
0.33 8e-29 129 At4g39180 830073 SEC14 encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae C.G. S.X.
0.22 1e-18 95 At2g21520 816691 transporter F:transporter activity;P:transport;C:intracellular;MPFO C.G. S.X.
0.13 2e-17 91 At2g16380 816135 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:intracellular;MPFO C.G. S.X.
0.15 4e-12 73 At4g39170 830072 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative F:phosphatidylinositol transporter activity, transporter activity;P:transport;C:plasma membrane;MPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 3e-47 190 Glycine max GmaAffx.89158.1.A1_at CK605958 - - 4e-44 At2g21540 SFH3 (SEC14-LIKE 3) C.G. S.X.
0.05 4e-4 46 Hordeum vulgare Contig8148_at Contig8148 - - 2e-2 At2g16380 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.19 6e-28 127 Oryza sativa Os02g0440900 9630.m02277 - Phosphatidylinositol transfer-like protein II 3e-28 At2g18180 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.44 9e-94 345 Populus trichocarpa PtpAffx.207383.1.S1_at pmrna14642 hypothetical protein - 6e-94 At2g18180 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.11 4e-6 54 Triticum aestivum Ta.27363.1.S1_at BT008962.1 - - 6e-6 At2g18180 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.13 3e-7 56 Vitis vinifera 1612370_at CB974818 hypothetical protein LOC100252199 - 1e-46 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.12 7e-12 71 Zea mays Zm.6096.2.S1_at AJ006545 - - 2e-26 At2g21520 transporter C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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