CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g18050

Gene name HIS1-3 (HISTONE H1-3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g18050 816317 HIS1-3 (HISTONE H1-3) encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA. S.X. H.G.
0.33 38.1 At1g21000 838694 zinc-binding family protein F:binding;P:biological_process unknown;C:unknown;P S.X. H.G.
0.22 17.5 At1g26665 839207 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.20 14.4 At2g42890 818890 AML2 (ARABIDOPSIS-MEI2-LIKE 2) A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices. S.X. H.G.
0.15 7.8 At3g20250 821569 APUM5 (Arabidopsis Pumilio 5) F:RNA binding, binding;P:unknown;C:vacuole;OFMPB S.X. H.G.
0.14 6.8 At2g19810 816500 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;POM S.X. H.G.
0.08 2.3 At4g29820 829104 CFIM-25 Encodes a homolog of the protein CFI-25, a polyadenylation factor subunit. S.X. H.G.
0.04 0.9 At4g09830 826572 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.04 0.9 At1g15740 838143 leucine-rich repeat family protein F:protein binding;P:unknown;C:cellular_component unknown;MPBOFVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
172.5 100.0 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
119.6 99.9 E-MEXP-1443-raw-cel-1581869573
110.5 99.9 GSM268247 WT-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
76.3 99.9 GSM142627 MC002_ATH1_A2.2-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
75.6 99.9 GSM142641 MC002_ATH1_A7.1-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
75.5 99.9 E-MEXP-148-raw-cel-350529179
72.5 99.9 GSM142646 MC002_ATH1_A8.3-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
68.6 99.9 E-MEXP-1443-raw-cel-1581869515
66.8 99.8 GSM142645 MC002_ATH1_A8.2-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
66.7 99.8 GSM142643 MC002_ATH1_A7.3-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-2 40 At3g09035 820056 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:endomembrane system;PO C.G. S.X.
0.02 2e-1 36 At5g41020 834104 myb family transcription factor F:transcription factor activity, DNA binding;P:unknown;C:unknown;MOFBPVA C.G. S.X.
0.03 2e-1 36 At3g61970 825370 NGA2 (NGATHA2) F:transcription factor activity;P:flower development, leaf development;C:cellular_component unknown;P C.G. S.X.
0.03 2e-1 36 At2g37910 818367 cation/hydrogen exchanger, putative (CHX21) F:monovalent cation:proton antiporter activity;P:cation transport;C:endomembrane system;P C.G. S.X.
0.03 2e-1 36 At2g17680 816275 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 36 At1g09170 837437 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPB C.G. S.X.
0.03 1e+0 34 At5g14440 831295 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-6 52 Glycine max Gma.5833.2.S1_x_at BE801610 - - 8e-6 At2g18050 HIS1-3 (HISTONE H1-3) C.G. S.X.
0.07 3e-2 38 Hordeum vulgare Contig1147_s_at Contig1147 - - 6e-15 At1g07790 HTB1 C.G. S.X.
0.03 5e-1 36 Oryza sativa Os.55678.1.S1_at - - - 0 C.G. S.X.
0.11 9e-2 38 Populus trichocarpa PtpAffx.3084.1.S1_at CV260579 - - 1e-1 At2g18050 HIS1-3 (HISTONE H1-3) C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.52006.1.S1_at CA714803 - - 3e+0 At1g01305 unknown protein C.G. S.X.
0.04 5e-3 40 Vitis vinifera 1615370_at CF372878 hypothetical protein LOC100266022 - 6e-2 At4g08330 unknown protein C.G. S.X.
0.04 1e-1 36 Zea mays Zm.18134.1.A1_at CN844971 - - 2e-1 At2g18050 HIS1-3 (HISTONE H1-3) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009414 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
C GO:0006334 The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage