CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g17890

Gene name CPK16

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At2g17890 816299 CPK16 member of Calcium Dependent Protein Kinase S.X. H.G.
0.89 94.6 At2g24370 816973 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.80 89.8 At1g52580 841690 ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5) F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA S.X. H.G.
0.57 73.8 At4g04930 825832 DES-1-LIKE Encodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues. S.X. H.G.
0.23 19.3 At5g12000 831073 kinase F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
250.7 100.0 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
234.2 100.0 E-MEXP-285-raw-cel-440782725
192.0 100.0 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
191.0 100.0 E-MEXP-285-raw-cel-440782791
179.2 100.0 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
160.0 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
139.0 99.9 E-MEXP-1138-raw-cel-1432772522
136.4 99.9 E-MEXP-1138-raw-cel-1432773034
134.3 99.9 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
132.6 99.9 E-MEXP-1138-raw-cel-1432773066
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 0 823 At4g36070 829763 CPK18 member of Calcium Dependent Protein Kinase C.G. S.X.
0.45 1e-86 321 At5g66210 836753 CPK28 member of Calcium Dependent Protein Kinase C.G. S.X.
0.03 4e-9 63 At3g50530 824217 CRK (CDPK-related kinase) CDPK-related kinase C.G. S.X.
0.02 1e-5 52 At3g20410 821586 CPK9 (calmodulin-domain protein kinase 9) calmodulin-domain protein kinase CDPK isoform 9 (CPK9) C.G. S.X.
0.03 2e-4 48 At5g24430 832514 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
0.03 3e-3 44 At3g49370 824099 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 1e-25 119 Glycine max Gma.17453.2.S1_at BU964441 - - 6e-11 At4g36070 CPK18 C.G. S.X.
0.25 3e-36 153 Hordeum vulgare Contig11154_at Contig11154 - - 1e-15 At5g66210 CPK28 C.G. S.X.
0.28 1e-32 143 Oryza sativa Os07g0409900 AF194414.2 - Protein kinase domain containing protein 6e-33 At2g17890 CPK16 C.G. S.X.
0.10 1e-9 65 Populus trichocarpa PtpAffx.146636.1.A1_at CV268823 calcium dependent protein kinase 16 - 9e-15 At5g66210 CPK28 C.G. S.X.
0.08 2e-4 48 Triticum aestivum Ta.5515.1.S1_at CA681683 Calcium-dependent protein kinase - 4e-3 At5g66210 CPK28 C.G. S.X.
0.12 5e-15 81 Vitis vinifera 1608587_at CD799705 hypothetical protein LOC100248850 - 9e-21 At5g66210 CPK28 C.G. S.X.
0.02 3e-5 50 Zea mays Zm.19037.1.S1_at CA404446 - - 1e-30 At3g50530 CRK (CDPK-related kinase) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006468 The process of introducing a phosphate group on to a protein.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage