CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g17370

Gene name HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g17370 816244 HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2) Encodes a 3-hydroxy-3-methylglutaryl-CoA reductase (HMGR) that is involved in the synthesis of sterol and triterpenoid compounds. S.X. H.G.
0.57 73.8 At5g47520 834802 AtRABA5a (Arabidopsis Rab GTPase homolog A5a) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA S.X. H.G.
0.50 65.3 At4g33140 829451 unknown protein F:unknown;P:unknown;C:unknown;OBPFV S.X. H.G.
0.44 57.2 At3g22290 821798 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP S.X. H.G.
0.29 30.3 At1g36050 840509 unknown protein F:molecular_function unknown;P:fatty acid biosynthetic process;C:plasma membrane;MOFP S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
76.3 99.9 E-ATMX-35-raw-cel-1574334832
61.8 99.8 E-ATMX-35-raw-cel-1574334816
57.7 99.8 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.6 99.8 E-ATMX-35-raw-cel-1574334800
43.6 99.8 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
37.0 99.7 GSM311289 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
31.7 99.7 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
25.2 99.6 GSM184521 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
23.6 99.6 E-ATMX-35-raw-cel-1574334880
22.9 99.6 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.27 3e-25 117 At1g76490 843982 HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confine C.G. S.X.
0.01 2e-1 38 At5g55280 835621 FTSZ1-1 Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division. C.G. S.X.
0.01 8e-1 36 At2g46520 819263 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative F:protein transporter activity, importin-alpha export receptor activity, binding;P:intracellular protein transport, cell proliferation, protein import into nucleus, docking;C:nucleus, nuclear pore, membrane, cytoplasm;MFOP C.G. S.X.
0.02 8e-1 36 At1g26880 838331 60S ribosomal protein L34 (RPL34A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, nucleolus, chloroplast;MOPFA C.G. S.X.
0.01 3e+0 34 At5g59420 836061 ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C) F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP C.G. S.X.
0.01 3e+0 34 At5g24820 832551 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PF C.G. S.X.
0.01 3e+0 34 At5g47230 834770 ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.01 3e+0 34 At4g10440 826636 dehydration-responsive family protein F:unknown;P:unknown;C:unknown;PBOA C.G. S.X.
0.01 3e+0 34 At4g26190 828725 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 9e-14 79 Glycine max Gma.1460.2.S1_a_at BF716331 - - 7e-69 At1g76490 HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) C.G. S.X.
0.11 1e-4 48 Hordeum vulgare Contig5833_s_at Contig5833 - - 3e-4 At2g17370 HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2) C.G. S.X.
0.15 2e-6 56 Oryza sativa Os08g0512700 AK060545.1 - 3-hydroxy-3-methylglutaryl coenzyme A reductase(EC 1.1.1.34) (Fragment) 8e-20 At1g76490 HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) C.G. S.X.
0.33 4e-25 117 Populus trichocarpa PtpAffx.84780.1.S1_s_at CF118968 hypothetical protein - 2e-25 At2g17370 HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2) C.G. S.X.
0.09 2e-4 48 Triticum aestivum TaAffx.128629.1.S1_s_at BF474704 - - 3e-6 At1g76490 HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) C.G. S.X.
0.15 2e-17 89 Vitis vinifera 1618724_at BM437885 - - 9e-24 At1g76490 HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) C.G. S.X.
0.05 2e-6 54 Zea mays Zm.2360.1.S1_at CD434336 hypothetical protein LOC100274191 - 2e-22 At1g76490 HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0016104 The chemical reactions and pathways resulting in the formation of triterpenoid compounds, terpenoids with six isoprene units.
X GO:0016126 The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
S GO:0008299 The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00045 Mevalonate pathway

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00900 Terpenoid backbone biosynthesis
01062 Biosynthesis of terpenoids and steroids
01066 Biosynthesis of alkaloids derived from terpenoid and polyketide
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage