Gene omics information

Query gene ID At2g17370
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g17370816244HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)Encodes a 3-hydroxy-3-methylglutaryl-CoA reductase (HMGR) that is involved in the synthesis of sterol and triterpenoid compounds.S.X.H.G.
0.5773.8At5g47520834802AtRABA5a (Arabidopsis Rab GTPase homolog A5a)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAS.X.H.G.
0.5065.3At4g33140829451unknown proteinF:unknown;P:unknown;C:unknown;OBPFVS.X.H.G.
0.4457.2At3g22290821798unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPS.X.H.G.
0.2930.3At1g36050840509unknown proteinF:molecular_function unknown;P:fatty acid biosynthetic process;C:plasma membrane;MOFPS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
57.799.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.699.8GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
37.099.7GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
31.799.7GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
25.299.6GSM184521Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
22.999.6GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.273e-25117At1g76490843982HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confineC.G.S.X.
0.012e-138At5g55280835621FTSZ1-1Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division.C.G.S.X.
0.018e-136At2g46520819263cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putativeF:protein transporter activity, importin-alpha export receptor activity, binding;P:intracellular protein transport, cell proliferation, protein import into nucleus, docking;C:nucleus, nuclear pore, membrane, cytoplasm;MFOPC.G.S.X.
0.028e-136At1g2688083833160S ribosomal protein L34 (RPL34A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, nucleolus, chloroplast;MOPFAC.G.S.X.
0.013e+034At5g59420836061ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOPC.G.S.X.
0.013e+034At5g24820832551aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFC.G.S.X.
0.013e+034At5g47230834770ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.C.G.S.X.
0.013e+034At4g10440826636dehydration-responsive family proteinF:unknown;P:unknown;C:unknown;PBOAC.G.S.X.
0.013e+034At4g26190828725-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.239e-1479Glycine maxGma.1460.2.S1_a_atBF716331--7e-69At1g76490HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)C.G.S.X.
0.111e-448Hordeum vulgareContig5833_s_atContig5833--3e-4At2g17370HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)C.G.S.X.
0.152e-656Oryza sativaOs08g0512700AK060545.1-3-hydroxy-3-methylglutaryl coenzyme A reductase(EC (Fragment)8e-20At1g76490HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)C.G.S.X.
0.334e-25117Populus trichocarpaPtpAffx.84780.1.S1_s_atCF118968hypothetical protein-2e-25At2g17370HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)C.G.S.X.
0.092e-448Triticum aestivumTaAffx.128629.1.S1_s_atBF474704--3e-6At1g76490HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)C.G.S.X.
0.152e-1789Vitis vinifera1618724_atBM437885--9e-24At1g76490HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)C.G.S.X.
0.052e-654Zea maysZm.2360.1.S1_atCD434336hypothetical protein LOC100274191-2e-22At1g76490HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0016104The chemical reactions and pathways resulting in the formation of triterpenoid compounds, terpenoids with six isoprene units.
XGO:0016126The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
SGO:0008299The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00045Link to KaPPA-View 4Mevalonate pathway

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00900Link to KEGG PATHWAYTerpenoid backbone biosynthesis
01062Link to KEGG PATHWAYBiosynthesis of terpenoids and steroids
01066Link to KEGG PATHWAYBiosynthesis of alkaloids derived from terpenoid and polyketide
01070Link to KEGG PATHWAYBiosynthesis of plant hormones
01100Link to KEGG PATHWAYMetabolic pathways
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