CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g17280

Gene name phosphoglycerate/bisphosphoglycerate mutase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.12 4.9 At2g17280 816234 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;FOPB S.X. H.G.
0.55 70.6 At2g42570 818857 unknown protein F:unknown;P:biological_process unknown;C:vacuole;P S.X. H.G.
0.40 50.8 At2g28510 817399 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB S.X. H.G.
0.40 50.8 At2g44830 819092 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, nucleus;MOPFBVA S.X. H.G.
0.13 5.8 At1g15170 838083 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:chloroplast, membrane;BOPFMA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
218.8 100.0 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
102.4 99.9 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
84.8 99.9 E-ATMX-31-raw-cel-1516947916
79.0 99.9 E-ATMX-31-raw-cel-1516947899
72.6 99.9 E-ATMX-13-raw-cel-1556149743
62.9 99.8 E-MEXP-1797-raw-cel-1669768075
56.8 99.8 E-ATMX-31-raw-cel-1516947882
50.7 99.8 E-MEXP-1797-raw-cel-1669767976
48.0 99.8 E-MEXP-1797-raw-cel-1669768084
48.0 99.8 E-MEXP-1797-raw-cel-1669768003
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.27 1e-19 97 At1g58280 842197 - F:unknown;P:unknown;C:chloroplast;FOPB C.G. S.X.
0.06 3e-11 69 At5g64460 836567 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FOPBM C.G. S.X.
0.01 7e-3 42 At2g19260 816443 ELM2 domain-containing protein / PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;MPOFBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 6e-4 46 Glycine max Gma.3537.1.S1_at AY004240.1 phosphoglycerate mutase-like protein - 6e-4 At2g17280 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig2345_at Contig2345 - - 3e-1 At5g04800 40S ribosomal protein S17 (RPS17D) C.G. S.X.
0.04 2e-1 38 Oryza sativa Os04g0102500 CR292872 - Phosphoglycerate mutase-like protein 3e-6 At5g64460 - C.G. S.X.
0.22 6e-4 46 Populus trichocarpa PtpAffx.201971.1.S1_at pmrna3940 hypothetical protein - 1e-7 At1g58280 - C.G. S.X.
0.06 7e-3 42 Triticum aestivum Ta.9338.1.S1_at CK156892 - - 5e-8 At1g58280 - C.G. S.X.
0.04 3e-5 48 Vitis vinifera 1608530_at CB971070 hypothetical protein LOC100265997 - 2e-4 At5g64460 - C.G. S.X.
0.08 2e-4 46 Zea mays Zm.5268.1.S1_at CF626642 - - 1e-5 At1g58280 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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