CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g16940

Gene name RNA recognition motif (RRM)-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.74 86.1 At2g16940 816197 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:mRNA processing;C:nucleus;MOFPBVA S.X. H.G.
0.64 78.9 At4g32551 829390 LUG (LEUNIG) LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. S.X. H.G.
0.60 75.7 At5g51300 835204 splicing factor-related F:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:RNA splicing;C:unknown;MFPOBVA S.X. H.G.
0.56 73.0 At4g39680 830123 SAP domain-containing protein F:DNA binding, nucleic acid binding;P:biological_process unknown;C:cytosol, nucleus, chloroplast;MPOFBVA S.X. H.G.
0.44 57.2 At1g61010 842393 CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) F:protein binding;P:mRNA polyadenylation;C:mRNA cleavage and polyadenylation specificity factor complex, nucleus;BOMAFPV S.X. H.G.
0.43 55.3 At1g26170 839158 binding / protein transporter F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFPO S.X. H.G.
0.43 55.3 At4g15900 827272 PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) Mutations confer hypersensitivity to glucose and sucrose and augments sensitivity to cytokinin, ethylene, ABA and auxin. Encodes a nuclear WD40 protein that is imported into the nucleus. Essential for plant innate immunity. Interacts with MOS4 and AtCDC5. It is also predicted to have two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase, and may affect the stability of AKIN10. S.X. H.G.
0.42 53.9 At3g61240 825296 DEAD/DEAH box helicase, putative (RH12) F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:unknown;OBMFPAV S.X. H.G.
0.42 53.9 At5g53620 835444 unknown protein F:unknown;P:biological_process unknown;C:unknown;MOBFPAV S.X. H.G.
0.42 53.9 At4g30890 829213 UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) Encodes a ubiquitin-specific protease. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.1 99.6 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
14.4 99.4 GSM142596 DB001_ATH1_A6-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
13.5 99.4 GSM142594 DB001_ATH1_A4-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
13.2 99.4 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.6 99.3 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.1 99.3 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
12.1 99.3 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.7 99.3 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.2 99.2 GSM142632 MC002_ATH1_A4.1-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.9 99.2 GSM142634 MC002_ATH1_A4.3-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.18 2e-8 61 At5g09880 830848 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:mRNA processing;C:nucleus;MOFPBVA C.G. S.X.
0.02 5e-2 40 At1g73620 843696 thaumatin-like protein, putative / pathogenesis-related protein, putative F:unknown;P:response to other organism;C:membrane;PMFBO C.G. S.X.
0.02 2e-1 38 At5g25890 832658 IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28) encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene. C.G. S.X.
0.01 2e-1 38 At3g55340 824700 PHIP1 (PHRAGMOPLASTIN INTERACTING PROTEIN 1) Plant-specific protein. Interacts with phragmoplastin, Rop1 and Rop2. Involved in cell plate formation. C.G. S.X.
0.01 8e-1 36 At5g37430 833719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA C.G. S.X.
0.01 8e-1 36 At4g24610 828563 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMFPB C.G. S.X.
0.01 8e-1 36 At4g37860 829942 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV C.G. S.X.
0.01 8e-1 36 At3g49590 824121 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 9e-14 79 Glycine max GmaAffx.57038.1.S1_at AI899820 - - 9e-23 At5g09880 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.09 7e-3 42 Hordeum vulgare Contig10443_at Contig10443 - - 8e-14 At5g09880 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.08 7e-9 63 Oryza sativa Os03g0153000 CB648024 - Splicing factor, CC1-like family protein 2e-9 At2g16940 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.29 1e-22 109 Populus trichocarpa PtpAffx.204314.1.S1_at pmrna8491 hypothetical protein - 7e-23 At2g16940 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.09 6e-5 50 Triticum aestivum Ta.7537.1.S1_at CK199057 - - 7e-5 At2g16940 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.15 3e-22 105 Vitis vinifera 1610665_s_at BQ798907 hypothetical protein LOC100253813 - 7e-22 At2g16940 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.08 6e-6 52 Zea mays Zm.4300.1.S1_at AW055569 - - 9e-17 At5g09880 RNA recognition motif (RRM)-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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