CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g16900

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At2g16900 816192 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POMVFBA S.X. H.G.
0.67 81.6 At4g18950 827630 ankyrin protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:nucleus, cytoplasm;MOPBFVA S.X. H.G.
0.58 73.8 At1g62300 842527 WRKY6 transcription factor WRKY6 (WRKY6) S.X. H.G.
0.44 57.2 At1g76680 844001 OPR1 Encodes a a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases. One of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. S.X. H.G.
0.44 57.2 At5g63790 836499 ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102) Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings. S.X. H.G.
0.40 50.8 At4g24160 828516 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMFPA S.X. H.G.
0.33 38.1 At4g25390 828642 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA S.X. H.G.
0.22 17.5 At1g76070 843939 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
169.4 100.0 E-MEXP-807-raw-cel-1173272948
140.8 99.9 E-MEXP-1443-raw-cel-1581869863
99.4 99.9 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
92.8 99.9 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
92.2 99.9 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
91.0 99.9 GSM133973 Birnbaum_1-3_src5-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
90.2 99.9 E-MEXP-1443-raw-cel-1581869921
78.3 99.9 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
63.2 99.8 GSM133968 Birnbaum_1-19_LRC-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
58.7 99.8 GSM184634 Arabidopsis, root cells, 140 mM NaCl, replicate 1 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 2e-28 127 At4g35110 829663 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA C.G. S.X.
0.01 1e-1 38 At4g17210 827432 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.02 6e-1 36 At5g22290 832289 anac089 (Arabidopsis NAC domain containing protein 89) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.01 6e-1 36 At4g35985 829753 senescence/dehydration-associated protein-related F:unknown;P:unknown;C:chloroplast;MPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-1 36 Glycine max GmaAffx.92184.1.S1_s_at CF807909 - - 3e-1 At2g16900 - C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HU10K01u_at HU10K01u - - 2e-1 At2g47780 rubber elongation factor (REF) protein-related C.G. S.X.
0.03 4e+0 34 Oryza sativa Os01g0903766 9629.m06730 - - 2e-2 At1g02710 glycine-rich protein C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.18183.1.A1_at CV257931 - - 1e-1 At1g28570 GDSL-motif lipase, putative C.G. S.X.
0.02 2e+0 34 Triticum aestivum Ta.9620.2.A1_at BJ217452 - - 6e-1 At2g27390 proline-rich family protein C.G. S.X.
0.02 4e-2 38 Vitis vinifera 1618253_at CD800411 hypothetical protein LOC100246718 - 7e-49 At2g39390 60S ribosomal protein L35 (RPL35B) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.7846.1.A1_x_at BM080581 MPK17-2 - putative MAPK - 1e+0 At3g12210 sequence-specific DNA binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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