CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g16700

Gene name ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g16700 816171 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) Encodes actin depolymerizing factor 5 (ADF5). S.X. H.G.
0.40 50.8 At5g27830 832845 - F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;MOP S.X. H.G.
0.38 46.7 At5g04260 830305 WCRKC2 (WCRKC THIOREDOXIN 2) Encodes a thioredoxin (WCRKC2) localized in chloroplast stroma. Contains a WCRKC motif. S.X. H.G.
0.36 43.6 At4g34120 829558 LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1) F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BAOPMF S.X. H.G.
0.06 1.4 At3g57090 824876 BIGYIN Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division. S.X. H.G.
0.06 1.4 At2g16600 816161 ROC3 Encodes cytosolic cyclophilin ROC3. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.8 99.7 GSM131277 AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
30.1 99.7 GSM131281 AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
30.0 99.7 GSM131282 AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
25.7 99.7 GSM74909 ice1_24H Cold_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
25.6 99.7 GSM131278 AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
23.0 99.6 GSM74908 ice1_24H Cold_Rep1 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
19.6 99.6 GSM133821 Yang_1-6_old-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
19.4 99.6 GSM134423 St.Clair_1-120_434_Van-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5756 Expression Level Polymorphism Project (ELP) - Van-0
18.0 99.5 E-MEXP-1474-raw-cel-1593932769
17.6 99.5 GSM131276 AtGen_6-1512_Cold(4°C)-Shoots-12.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 4e-55 214 At4g34970 829649 ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) F:actin binding;P:biological_process unknown;C:intracellular;MPOF C.G. S.X.
0.22 1e-14 79 At3g46000 823743 ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) Encodes depolymerizing factor 2. C.G. S.X.
0.08 4e-9 61 At5g52360 835312 ADF10 (ACTIN DEPOLYMERIZING FACTOR 10) F:actin binding;P:biological_process unknown;C:intracellular;MPOF C.G. S.X.
0.13 1e-8 59 At5g59890 836111 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) actin depolymerizing factor 4 (ADF4) mRNA, complete cds C.G. S.X.
0.07 2e-7 56 At4g25590 828664 ADF7 (actin depolymerizing factor 7) F:actin binding;P:biological_process unknown;C:intracellular;MPOF C.G. S.X.
0.07 3e-6 52 At2g31200 817676 ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) Encodes actin depolymerizing factor 6 (ADF6). C.G. S.X.
0.08 3e-3 42 At1g01750 839281 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB C.G. S.X.
0.07 1e-2 40 At4g00680 828037 ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 4e-31 135 Glycine max GmaAffx.54969.1.S1_at BQ576564 - - 6e-31 At2g16700 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) C.G. S.X.
0.19 3e-20 97 Hordeum vulgare Contig5692_s_at Contig5692 - - 6e-12 At4g34970 ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) C.G. S.X.
0.18 1e-16 87 Oryza sativa Os03g0243100 AK104056.1 - Actin-depolymerizing factor 5 (ADF-5) (AtADF5) 2e-16 At2g16700 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) C.G. S.X.
0.47 4e-31 135 Populus trichocarpa PtpAffx.57531.1.A1_at CV264188 hypothetical protein - 5e-31 At2g16700 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) C.G. S.X.
0.10 6e-5 48 Triticum aestivum Ta.5577.2.S1_at CA624616 - - 8e-14 At3g46000 ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) C.G. S.X.
0.12 1e-3 42 Vitis vinifera 1618754_at CF203233.1 hypothetical protein LOC100263646 - 5e-31 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) C.G. S.X.
0.19 3e-20 97 Zea mays Zm.1019.1.A1_at AW288674 actin-depolymerizing factor 5 - 2e-19 At2g16700 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage