CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g16340

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.63 78.1 At2g16340 816130 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMFOPAV S.X. H.G.
0.60 75.7 At3g50540 824218 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.44 57.2 At4g06529 3770415 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.40 50.8 At1g32290 840121 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.18 11.4 At3g44950 823630 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVA S.X. H.G.
0.10 3.4 At5g38870 3771365 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
871.5 100.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
317.9 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
259.0 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
257.9 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
246.1 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
213.8 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
186.5 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
180.7 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
166.0 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
165.7 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 1e-7 56 At1g56530 842106 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.14 2e-6 52 At3g50250 824187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.07 4e-5 48 At2g11005 815567 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.09 3e-2 38 At5g26840 832742 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown C.G. S.X.
0.04 3e-2 38 At3g06490 819827 MYB108 (myb domain protein 108) putative transcription factor MYB108 (MYB108) mRNA, C.G. S.X.
0.03 3e-2 38 At3g17410 821005 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.02 1e-1 36 At5g46760 834719 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMFBV C.G. S.X.
0.02 1e-1 36 At5g58080 835920 ARR18 (ARABIDOPSIS RESPONSE REGULATOR 18) member of Response Regulator: B- Type C.G. S.X.
0.02 1e-1 36 At4g38550 830012 - F:unknown;P:unknown;C:chloroplast;MFPOBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-1 36 Glycine max GmaAffx.34785.5.S1_s_at BQ453262 - - 6e-4 At2g43150 proline-rich extensin-like family protein C.G. S.X.
0.04 3e-1 34 Hordeum vulgare Contig15918_at Contig15918 - - 2e+0 At5g43285 - C.G. S.X.
0.06 3e-1 36 Oryza sativa Os03g0555000 NM_184735.1 - - 2e-1 At2g16340 unknown protein C.G. S.X.
0.06 3e-6 52 Populus trichocarpa PtpAffx.4395.4.A1_at CX182030 hypothetical protein - 2e-5 At2g43970 La domain-containing protein C.G. S.X.
0.07 6e-4 44 Triticum aestivum TaAffx.65594.1.S1_at BJ236677 - - 1e+0 At5g43410 ethylene-responsive factor, putative C.G. S.X.
0.06 4e-2 36 Vitis vinifera 1616954_s_at BQ794939 hypothetical protein LOC100252003 - 2e+1 At5g04470 SIM (SIAMESE) C.G. S.X.
0.04 4e+0 30 Zea mays Zm.2259.1.A1_at AW330810 - - 1e+1 At5g09270 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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