Gene omics information

Query gene ID At2g15960
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4659.8At2g15960816091unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.2930.3At2g33830817950dormancy/auxin associated family proteinF:unknown;P:unknown;C:cellular_component unknown;PS.X.H.G.
0.2930.3At5g22270832287unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.2522.6At1g49500841374unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.2522.6At4g05070825849unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.2217.5At1g11530837696ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity.S.X.H.G.
0.2115.8At2g15890816085MEE14 (maternal effect embryo arrest 14)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POS.X.H.G.
0.114.1At2g45170819125AtATG8eInvolved in autophagy. Under nutrient starvation the protein localizes to autophagosomes.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
56.899.8E-MEXP-1443-raw-cel-1581869688
26.599.7E-MEXP-1443-raw-cel-1581869632
22.999.6GSM173443wild-type Arabidopsis, biological rep2GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
22.499.6GSM173442wild-type Arabidopsis, biological rep1GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
20.699.6GSM142835MG001_ATH1_A13-Torres-4N1GSE6176Impact of Type III effectors on plant defense responses
20.699.6GSM142820PJ002_ATH1_A1-jarvis-iae1GSE6175Clarification of the genetic basis of the iae1 and iae2 phenotypes
19.899.6GSM142827PJ002_ATH1_A8-jarvis-B1798GSE6175Clarification of the genetic basis of the iae1 and iae2 phenotypes
19.599.6GSM25316548h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
19.599.6GSM173445oxt6 mutant, biological rep1GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
19.499.6GSM142822PJ002_ATH1_A3-jarvis-iae1GSE6175Clarification of the genetic basis of the iae1 and iae2 phenotypes
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-238At4g26190828725-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAC.G.S.X.
0.031e-136At4g30400829163zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
0.021e-136At3g59940825164kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFAC.G.S.X.
0.014e-134At3g25500822136AFH1 (FORMIN HOMOLOGY 1)Poly-L-proline-containing (PLP) protein that form part of the signal-transduction cascade that leads to rearrangement of the actin cytoskeleton. AFH1 is a nonprocessive formin that moves from the barbered end to the side of an actin filament after the nucleation event.C.G.S.X.
0.024e-134At3g26400822244EIF4B1member of eIF4B - eukaryotic initiation factor 4BC.G.S.X.
0.024e-134At2g01940814725nucleic acid binding / transcription factor/ zinc ion bindingMay be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.C.G.S.X.
0.024e-134At2g18650816380MEE16 (maternal effect embryo arrest 16)F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:chloroplast;PMOFVC.G.S.X.
0.024e-134At2g44200819028unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.046e-134Glycine maxGma.8283.1.S1_atAW350369--2e-48At5g12190RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.062e-134Hordeum vulgareEBem04_SQ004_I19_atEBem04_SQ004_I19--7e-1At2g15960unknown proteinC.G.S.X.
0.048e-134Oryza sativaOs05g04498009633.m03486--4e-1At2g46505SDH4C.G.S.X.
0.061e-240Populus trichocarpaPtpAffx.214814.1.S1_s_atpmrna28675hypothetical protein-1e-2At2g15960unknown proteinC.G.S.X.
0.075e-134Triticum aestivumTa.13467.1.S1_atBJ268402--6e-1At2g15960unknown proteinC.G.S.X.
0.041e-134Vitis vinifera1622541_atCB342787hypothetical protein LOC100258249-4e-35At5g12190RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.043e+030Zea maysZm.9832.1.A1_atBM340381hypothetical protein LOC100279963-4e+0At5g65166unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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