Gene omics information

Query gene ID At2g15820
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g15820816078OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51)Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage.S.X.H.G.
0.7184.2At3g53700824537MEE40 (maternal effect embryo arrest 40)F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBAS.X.H.G.
0.6176.7At1g70070843343EMB25 (EMBRYO DEFECTIVE 25)Allelic to ISE2(increased size exclusion limit of plasmodesmata 2). Mutants maintain dilated plasmodesmata at the embryonic torpedo stage.S.X.H.G.
0.2522.6At3g29230822578pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBS.X.H.G.
0.157.8At3g16290820876EMB2083 (embryo defective 2083)F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAVS.X.H.G.
0.146.8At2g20020816521CAF1Promotes the splicing of chloroplast group II introns. Splices clpP-1 and ropC1 introns.S.X.H.G.
0.114.1At5g52520835328OVA6 (OVULE ABORTION 6)F:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:regulation of photosynthesis, seed development, embryo sac development, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, chloroplast stroma;BOAMFPS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
36.099.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.799.7GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At2g01740814704pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.022e-138At2g47910819403CRR6 (chlororespiratory reduction 6)Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.C.G.S.X.
0.018e-136At5g19020832021pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFC.G.S.X.
0.018e-136At5g58410835954binding / protein binding / zinc ion bindingF:protein binding, binding, zinc ion binding;P:unknown;C:unknown;MFOPBC.G.S.X.
0.018e-136At4g11930826800unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.018e-136At4g10230826614unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBC.G.S.X.
0.018e-136At3g18524821383MSH2 (MUTS HOMOLOG 2)Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGma.16836.1.A1_atCD390491--2e+0At4g35710unknown proteinC.G.S.X.
0.021e-138Hordeum vulgareHV_CEb0023O21f_atHV_CEb0023O21f--9e-1At1g24440protein binding / zinc ion bindingC.G.S.X.
0.022e+036Oryza sativaOs05g02803009633.m01824--5e+0At4g25433peptidoglycan-binding LysM domain-containing proteinC.G.S.X.
0.063e-138Populus trichocarpaPtpAffx.204650.1.S1_atpmrna9148hypothetical protein-2e-1At2g15820OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51)C.G.S.X.
0.029e-136Triticum aestivumTaAffx.124483.1.A1_atCK215920--1e+0At3g23175lesion inducing protein-relatedC.G.S.X.
0.021e+034Vitis vinifera1612996_atCD798919--5e-2At4g11600ATGPX6 (GLUTATHIONE PEROXIDASE 6)C.G.S.X.
0.024e-136Zea maysZm.4185.1.A1_atAI622761hypothetical protein LOC100274506-9e-8At1g243603-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductaseC.G.S.X.
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Biological processes

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ECCGO IDProcess Name
XGO:0000373The splicing of Group II introns. This occurs by a ribozymic mechanism where the intron sequence forms a distinct 3D structure, characteristic of Group II introns and containing splice site consensus sequences, that is involved in catalyzing the splicing reactions, though protein factors are also required in vivo. Splicing occurs by a series of two transesterification reactions (mechanistically similar to those for splicing of nuclear mRNAs) initiated by a bulged adenosine residue within the intron sequence as the initiating nucleophile. The intron is excised as a lariat.
XGO:0048564The aggregation, arrangement and bonding together of a set of components to form a photosystem I complex on the thylakoid membrane.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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