CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g15820

Gene name OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g15820 816078 OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51) Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage. S.X. H.G.
0.71 84.2 At3g53700 824537 MEE40 (maternal effect embryo arrest 40) F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBA S.X. H.G.
0.61 76.7 At1g70070 843343 EMB25 (EMBRYO DEFECTIVE 25) Allelic to ISE2(increased size exclusion limit of plasmodesmata 2). Mutants maintain dilated plasmodesmata at the embryonic torpedo stage. S.X. H.G.
0.25 22.6 At3g29230 822578 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB S.X. H.G.
0.15 7.8 At3g16290 820876 EMB2083 (embryo defective 2083) F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV S.X. H.G.
0.14 6.8 At2g20020 816521 CAF1 Promotes the splicing of chloroplast group II introns. Splices clpP-1 and ropC1 introns. S.X. H.G.
0.11 4.1 At5g52520 835328 OVA6 (OVULE ABORTION 6) F:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:regulation of photosynthesis, seed development, embryo sac development, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, chloroplast stroma;BOAMFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
36.0 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.1 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.8 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.7 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
28.6 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.6 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
27.4 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.6 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.2 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.1 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At2g01740 814704 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA C.G. S.X.
0.02 2e-1 38 At2g47910 819403 CRR6 (chlororespiratory reduction 6) Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain. C.G. S.X.
0.01 8e-1 36 At5g19020 832021 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMF C.G. S.X.
0.01 8e-1 36 At5g58410 835954 binding / protein binding / zinc ion binding F:protein binding, binding, zinc ion binding;P:unknown;C:unknown;MFOPB C.G. S.X.
0.01 8e-1 36 At4g11930 826800 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.01 8e-1 36 At4g10230 826614 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMB C.G. S.X.
0.01 8e-1 36 At3g18524 821383 MSH2 (MUTS HOMOLOG 2) Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max Gma.16836.1.A1_at CD390491 - - 2e+0 At4g35710 unknown protein C.G. S.X.
0.02 1e-1 38 Hordeum vulgare HV_CEb0023O21f_at HV_CEb0023O21f - - 9e-1 At1g24440 protein binding / zinc ion binding C.G. S.X.
0.02 2e+0 36 Oryza sativa Os05g0280300 9633.m01824 - - 5e+0 At4g25433 peptidoglycan-binding LysM domain-containing protein C.G. S.X.
0.06 3e-1 38 Populus trichocarpa PtpAffx.204650.1.S1_at pmrna9148 hypothetical protein - 2e-1 At2g15820 OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51) C.G. S.X.
0.02 9e-1 36 Triticum aestivum TaAffx.124483.1.A1_at CK215920 - - 1e+0 At3g23175 lesion inducing protein-related C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1612996_at CD798919 - - 5e-2 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) C.G. S.X.
0.02 4e-1 36 Zea mays Zm.4185.1.A1_at AI622761 hypothetical protein LOC100274506 - 9e-8 At1g24360 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase C.G. S.X.
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Biological processes

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ECC GO ID Process Name
X GO:0000373 The splicing of Group II introns. This occurs by a ribozymic mechanism where the intron sequence forms a distinct 3D structure, characteristic of Group II introns and containing splice site consensus sequences, that is involved in catalyzing the splicing reactions, though protein factors are also required in vivo. Splicing occurs by a series of two transesterification reactions (mechanistically similar to those for splicing of nuclear mRNAs) initiated by a bulged adenosine residue within the intron sequence as the initiating nucleophile. The intron is excised as a lariat.
X GO:0048564 The aggregation, arrangement and bonding together of a set of components to form a photosystem I complex on the thylakoid membrane.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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