CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g15695

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g15695 816063 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.46 59.8 At2g21950 816731 SKIP6 (SKP1 interacting partner 6) Encodes an SKP1 interacting partner (SKIP6). S.X. H.G.
0.41 52.4 At1g43700 840957 VIP1 (VIRE2-INTERACTING PROTEIN 1) Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half. S.X. H.G.
0.39 48.4 At5g47390 834786 myb family transcription factor F:transcription factor activity, DNA binding;P:in 8 processes;C:unknown;POFM S.X. H.G.
0.34 39.8 At3g51370 824300 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:plasma membrane;PMOFBV S.X. H.G.
0.30 32.1 At4g18710 827605 BIN2 (BRASSINOSTEROID-INSENSITIVE 2) ATSK (shaggy-like kinase) family member that encodes an AtSK protein involved in the cross-talk between auxin and brassinosteroid signaling pathways. BR-INSENSITIVE 2 mutant indicated that the BR-insensitive dwarf phenotype was due to a semidominant mutation in the BIN2. BIN2 is not allelic to BRI1. BIN2-mediated phosphorylation appears to promote BZR1 export from the nucleus. S.X. H.G.
0.30 32.1 At4g00335 828093 RHB1A F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;PMOFV S.X. H.G.
0.27 26.2 At5g57360 835842 ZTL (ZEITLUPE) Encodes clock-associated PAS protein ZTL; Also known as FKF1-like protein 2 or ADAGIO1(ADO1). A protein containing a PAS domain ZTL contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. ZTL is the F-box component of an SCF complex implicated in the degradation of TOC1. S.X. H.G.
0.26 24.4 At1g06060 837115 RanBPM-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO S.X. H.G.
0.26 24.4 At3g61180 825290 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
64.6 99.8 E-MEXP-1797-raw-cel-1669768039
38.8 99.8 E-MEXP-1797-raw-cel-1669768084
38.3 99.8 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
30.8 99.7 E-MEXP-1299-raw-cel-1519902871
29.5 99.7 E-MEXP-1797-raw-cel-1669767940
29.4 99.7 E-MEXP-1797-raw-cel-1669768030
29.4 99.7 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
23.0 99.6 E-MEXP-1797-raw-cel-1669767985
22.0 99.6 E-MEXP-1797-raw-cel-1669767949
20.5 99.6 GSM253196 RGA-GR-DEX-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 3e-9 63 At5g44250 834448 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF C.G. S.X.
0.02 2e-1 38 At5g51740 835248 peptidase M48 family protein F:metalloendopeptidase activity;P:proteolysis;C:membrane;BOFMPA C.G. S.X.
0.01 6e-1 36 At5g55830 835677 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 6e-1 36 At3g59380 825107 FTA (FARNESYLTRANSFERASE A) Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1. C.G. S.X.
0.02 6e-1 36 At3g17010 820957 transcriptional factor B3 family protein transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary. C.G. S.X.
0.02 6e-1 36 At2g37590 818336 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBFA C.G. S.X.
0.02 6e-1 36 At1g59590 842249 ZCF37 ZCF37 mRNA, complete cds C.G. S.X.
0.01 3e+0 34 At5g03040 831696 iqd2 (IQ-domain 2) F:calmodulin binding;P:biological_process unknown;C:plasma membrane;PMOF C.G. S.X.
0.01 3e+0 34 At5g09360 830795 LAC14 (laccase 14) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-2 42 Glycine max Gma.14251.1.S1_at CD418459 - - 2e-12 At5g56940 ribosomal protein S16 family protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig21455_at Contig21455 - - 1e-11 At3g10090 40S ribosomal protein S28 (RPS28A) C.G. S.X.
0.03 1e+0 36 Oryza sativa Os06g0213400 AK071478.1 - Eukaryotic protein of unknown function DUF829family protein 9e-1 At2g15695 unknown protein C.G. S.X.
0.20 3e-13 77 Populus trichocarpa PtpAffx.18692.1.A1_at CV237973 hypothetical protein - 2e-13 At2g15695 unknown protein C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.50723.1.S1_at CA736435 - - 6e-1 At3g45280 SYP72 (SYNTAXIN OF PLANTS 72) C.G. S.X.
0.02 5e-2 38 Vitis vinifera 1608545_at CF212467 - - 3e-1 At5g54270 LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3) C.G. S.X.
0.03 3e-1 36 Zea mays Zm.4038.1.A1_at AI737071 hypothetical protein LOC100274123 - 9e-5 At1g75230 HhH-GPD base excision DNA repair family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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