CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g15580

Gene name zinc finger (C3HC4-type RING finger) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g15580 816051 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFBV S.X. H.G.
0.40 50.8 At1g31170 840004 SRX (SULFIREDOXIN) encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress S.X. H.G.
0.36 43.6 At3g13062 820493 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO S.X. H.G.
0.34 39.8 At2g20920 816626 unknown protein F:unknown;P:unknown;C:membrane;BPO S.X. H.G.
0.31 33.8 At5g11840 831057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBP S.X. H.G.
0.29 30.3 At1g60010 842295 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PFO S.X. H.G.
0.29 30.3 At1g13090 837866 CYP71B28 putative cytochrome P450 S.X. H.G.
0.29 30.3 At4g27990 828912 YGGT family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;BOP S.X. H.G.
0.28 30.3 At1g02475 839236 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP S.X. H.G.
0.27 26.2 At5g13720 831217 - F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
78.7 99.9 E-MEXP-509-raw-cel-829148703
28.2 99.7 GSM253165 48h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
20.1 99.6 GSM128659 Underwood_1-12_Mock-Inoculum-24h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
20.0 99.6 GSM142828 PJ002_ATH1_A9-jarvis-B1798 GSE6175 Clarification of the genetic basis of the iae1 and iae2 phenotypes
19.9 99.6 GSM128653 Underwood_1-6_Cor-hrpS-10e6-24h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
19.7 99.6 E-MEXP-509-raw-cel-829148385
19.4 99.6 GSM128648 Underwood_1-1_Cor-10e6-24h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
19.1 99.6 GSM142820 PJ002_ATH1_A1-jarvis-iae1 GSE6175 Clarification of the genetic basis of the iae1 and iae2 phenotypes
19.1 99.6 E-MEXP-509-raw-cel-829148420
19.0 99.5 GSM142824 PJ002_ATH1_A5-jarvis-iae2 GSE6175 Clarification of the genetic basis of the iae1 and iae2 phenotypes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e+0 34 At5g01270 831743 CPL2 Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. C.G. S.X.
0.02 1e+0 34 At1g10510 837591 emb2004 (embryo defective 2004) F:unknown;P:embryonic development ending in seed dormancy;C:mitochondrion, chloroplast, plastid, chloroplast envelope;MOBPF C.G. S.X.
0.02 5e+0 32 At5g01370 831905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV C.G. S.X.
0.01 5e+0 32 At5g45300 834566 BMY2 (BETA-AMYLASE 2) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PMBOF C.G. S.X.
0.01 5e+0 32 At3g63460 825521 WD-40 repeat family protein F:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex, membrane;MFOBPVA C.G. S.X.
0.01 5e+0 32 At3g57980 824967 DNA-binding bromodomain-containing protein F:DNA binding;P:unknown;C:unknown;MOFPBVA C.G. S.X.
0.01 5e+0 32 At2g36910 818265 ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1) Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR1.Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AT3G28860. PGP1 mediates cellular efflux of IAA and interacts with PIN genes that may confer an accelerated vectoral component to PGP-mediated transport. The non-polar localization of PGP1 at root and shoot apices, where IAA gradient-driven transport is impaired, may be required to confer directionality to auxin transport in those tissues. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.23216.1.S1_at BI788317 - - 3e-9 At1g30300 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare EBem06_SQ004_E07_s_at EBem06_SQ004_E07 - - 3e+0 At4g15140 unknown protein C.G. S.X.
0.03 2e+0 34 Oryza sativa Os03g0749400 9631.m05285 - Conserved hypothetical protein 9e-1 At2g15580 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.210043.1.S1_at pmrna19784 hypothetical protein - 2e-5 At2g36690 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.03 8e-2 38 Triticum aestivum TaAffx.95810.1.S1_at CA609147 - - 7e-2 At2g15580 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1609779_at CB974043 hypothetical protein LOC100264483 - 1e+0 At3g61230 LIM domain-containing protein C.G. S.X.
0.03 8e+0 30 Zea mays Zm.9603.1.A1_at BM341305 - - 1e+0 At4g15715 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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