CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g15020

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At2g15020 815991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.40 50.8 At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P S.X. H.G.
0.27 26.2 At2g21320 816671 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM S.X. H.G.
0.22 17.5 At1g55960 842047 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO S.X. H.G.
0.22 17.5 At5g42760 834285 - F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF S.X. H.G.
0.21 15.8 At1g32900 840184 starch synthase, putative F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM S.X. H.G.
0.20 14.4 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF S.X. H.G.
0.16 8.8 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.10 3.4 At5g24150 832480 SQP1 squalene monooxygenase gene homolog S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
227.0 100.0 GSM268251 WT-drought-2, biological rep 2 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
96.1 99.9 Evans_2-12_fab3-7-8-mut-aeq-cold_ATH1
87.0 99.9 GSM297392 At.StarchSD.WTSS3.WTR1L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
81.1 99.9 E-MEXP-1454-raw-cel-1585858145
69.1 99.9 GSM197142 aba3-1_2 with array type ATH1 from Affymetrix GSE7961 affy_aba_ath1-Characterization of aba3-1 suppressor mutants
67.6 99.9 Evans_2-4_fab1-mut-cold_ATH1
66.0 99.8 Evans_2-2_col-WT-cold_ATH1
65.6 99.8 GSM197141 wt_2 with array type ATH1 from Affymetrix GSE7961 affy_aba_ath1-Characterization of aba3-1 suppressor mutants
65.3 99.8 Evans_2-8_35s-FAD3-cold_ATH1
65.2 99.8 GSM297382 At.StarchSD.WTSS3.SS3R1L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At3g13080 820496 ATMRP3 encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. C.G. S.X.
0.01 2e-1 38 At1g71330 843474 ATNAP5 member of NAP subfamily C.G. S.X.
0.01 8e-1 36 At3g51450 824308 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF C.G. S.X.
0.01 8e-1 36 At2g35930 818166 PUB23 (PLANT U-BOX 23) Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max HgAffx.3912.1.A1_at CK348778 - - 6e-4 At4g15790 unknown protein C.G. S.X.
0.02 4e-1 36 Hordeum vulgare rbaal26g22_at rbaal26g22 - - 6e+0 At5g08330 TCP family transcription factor, putative C.G. S.X.
0.02 2e+0 36 Oryza sativa Os09g0334300 9637.m01383 - - 5e+0 At5g01350 unknown protein C.G. S.X.
0.07 5e-6 54 Populus trichocarpa PtpAffx.204701.1.S1_at pmrna9261 hypothetical protein - 3e-6 At2g15020 unknown protein C.G. S.X.
0.02 8e-1 36 Triticum aestivum Ta.10940.1.A1_at BQ166863 - - 2e+0 At2g30350 endo/excinuclease amino terminal domain-containing protein C.G. S.X.
0.09 6e-8 57 Vitis vinifera 1619733_at CB342943 hypothetical protein LOC100243866 - 1e-7 At2g15020 unknown protein C.G. S.X.
0.01 1e+0 34 Zea mays Zm.1792.1.A1_at AY107188.1 hypothetical protein LOC100191195 - 1e-6 At1g53120 RNA-binding S4 domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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