Gene omics information

Query gene ID At2g14835
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At2g14835815972zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPOS.X.H.G.
0.5873.8At3g19980821536ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)Encodes catalytic subunit of serine/threonine protein phosphatase 2A. It can associate with phytochromes A and B in vitro. Mutant plants display an accelerated flowering phenotype.S.X.H.G.
0.4761.2At3g11200820290AL2 (ALFIN-LIKE 2)AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.S.X.H.G.
0.4558.3At5g57460835851unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, chloroplast;MPOFS.X.H.G.
0.4457.2At5g11710831043epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedEPSIN1 plays an important role in the vacuolar trafficking of soluble proteins at the trans-Golgi network via its interaction with gamma-ADR, VTI11, VSR1, and clathrin. Associated with actin filaments and with the Golgi complex. Expressed in most tissues.S.X.H.G.
0.4355.3At1g09270837448IMPA-4 (IMPORTIN ALPHA ISOFORM 4)Protein interacts with Agrobacterium proteins VirD2 and VirE2.S.X.H.G.
0.4355.3At4g36480829800ATLCB1 (LONG-CHAIN BASE1)Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion.S.X.H.G.
0.4355.3At2g21600816698ATRER1BKey player of retrieval of ER membrane proteinsS.X.H.G.
0.4253.9At1g25490839135RCN1 (ROOTS CURL IN NPA)One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A; Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stemS.X.H.G.
0.4152.4At1g02130837023ARA-5 (ARABIDOPSIS RAS 5)Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
20.799.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.499.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.699.1GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
8.699.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
8.098.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
7.798.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.023e-240At3g59060825075PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.C.G.S.X.
0.015e-136At3g12810820463PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1)Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).C.G.S.X.
0.015e-136At3g60920825263beige/BEACH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBC.G.S.X.
0.022e+034At5g24800832549BZIP9 (BASIC LEUCINE ZIPPER 9)Encodes bZIP protein BZO2H2.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.122e-1067Glycine maxGma.11094.2.S1_a_atBU546011--1e-10At2g14835zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.044e-342Hordeum vulgareContig7589_s_atContig7589--1e-2At2g14835zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.127e-1169Oryza sativaOs10g0346200AK106542.1-Zn-finger, RING domain containing protein6e-11At2g14835zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.339e-22105Populus trichocarpaPtpAffx.204724.1.S1_x_atpmrna9308hypothetical protein-8e-22At2g14835zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.031e-138Triticum aestivumTaAffx.8417.1.S1_atCA625802--1e-3At4g00850GIF3 (GRF1-INTERACTING FACTOR 3)C.G.S.X.
0.092e-342Vitis vinifera1614002_atBQ794986hypothetical protein LOC100242874-6e-3At2g14835zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.032e-136Zea maysZmAffx.820.1.A1_atAI770463Hypothetical protein LOC100217195-8e-1At5g23950C2 domain-containing proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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