CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g14210

Gene name AGL44 (AGAMOUS-LIKE 44)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.43 55.3 At2g14210 815907 AGL44 (AGAMOUS-LIKE 44) MADS box gene, transcription factor S.X. H.G.
0.67 81.6 At3g28360 822465 PGP16 (P-GLYCOPROTEIN 16) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV S.X. H.G.
0.67 81.6 At5g65040 836628 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.57 73.8 At1g21890 838791 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAM S.X. H.G.
0.40 50.8 At1g78815 844218 LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
247.0 100.0 GSM142653 MC002_ATH1_A11.1-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
236.0 100.0 GSM142654 MC002_ATH1_A11.2-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
232.2 100.0 E-ATMX-31-raw-cel-1516948018
228.9 100.0 GSM142655 MC002_ATH1_A11.3-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
196.1 100.0 E-ATMX-31-raw-cel-1516947984
190.9 100.0 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
152.6 99.9 GSM142644 MC002_ATH1_A8.1-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
149.7 99.9 E-ATMX-31-raw-cel-1516948001
124.8 99.9 GSM142641 MC002_ATH1_A7.1-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
120.3 99.9 GSM142673 SF001_ATH1_A3-Fille-ANGR4-12 GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 2e-12 73 At4g37940 829950 AGL21 encodes a MADS box protein, highly expressed in the root. C.G. S.X.
0.07 4e-10 65 At2g45660 819174 AGL20 (AGAMOUS-LIKE 20) Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA. C.G. S.X.
0.16 4e-7 56 At3g57230 824890 AGL16 (AGAMOUS-LIKE 16) MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. C.G. S.X.
0.07 2e-6 54 At5g62165 836337 AGL42 (AGAMOUS LIKE 42) Encodes a MADS box transcription factor. Expressed in quiescent center. C.G. S.X.
0.12 6e-6 52 At2g22630 816794 AGL17 (agamous-like 17) Encodes a MADs domain containing protein involved in promoting flowering. Loss of function mutations show delayed flowering in long days and reduced levels of LFY and AP1 expression. C.G. S.X.
0.06 9e-5 48 At3g61120 825284 AGL13 (AGAMOUS-LIKE 13) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 1e-20 101 Glycine max GmaAffx.71421.1.S1_at AW706936 - - 4e-21 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig22417_at Contig22417 - - 3e+0 At3g13040 myb family transcription factor C.G. S.X.
0.04 7e-4 46 Oryza sativa Os12g0206800 AY177700.1 - Transcription factor MADS33 5e-4 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.23 2e-25 117 Populus trichocarpa PtpAffx.204772.1.S1_at pmrna9397 hypothetical protein - 1e-25 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.03 1e+0 34 Triticum aestivum Ta.14090.1.S1_at AB107991.1 PISTILLATA-like MADS box protein - 4e-2 At5g20240 PI (PISTILLATA) C.G. S.X.
0.05 4e-1 34 Vitis vinifera 1612606_at AF373602.1 MADS-box protein 3 - 7e-31 At2g03710 SEP4 (SEPALLATA 4) C.G. S.X.
0.09 2e-4 46 Zea mays Zm.15206.1.A1_at BM268642 - - 6e-18 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0048527 The process whose specific outcome is the progression of the lateral root over time, from its formation to the mature structure. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper.
X GO:0007584 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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