Gene omics information

Query gene ID At2g13810
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2726.2At2g13810815864ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1)F:transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation;C:chloroplast;BOAPMFS.X.H.G.
0.6781.6At1g19250838508FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)FMO1 is required for full expression of TIR-NB-LRR–conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.S.X.H.G.
0.4050.8At1g74710843810isochorismate synthase 1 (ICS1) / isochorismate mutaseEncodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).S.X.H.G.
0.4050.8At5g13320831173PBS3 (AVRPPHB SUSCEPTIBLE 3)Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1), WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.S.X.H.G.
0.051.1At1g68620843192hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOMFPAVS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
329.5100.0GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
120.199.9GSM131065Hammond_2-6_pho1mutant_Rep3_ATH1GSE5611Differential gene expression patterns in the phosphate deficient mutant, pho 1
73.499.9GSM142846MG001_ATH1_A27-Torres-9N1GSE6176Impact of Type III effectors on plant defense responses
67.399.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
51.299.8GSM128703Heinekamp_1-12_cs-root_Rep3_ATH1GSE5522Low chronic exposure of Arabidopsis thaliana to Caesium-137
50.099.8GSM244455Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At1g29730839851ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.017e-136At5g67310836866CYP81G1member of CYP81GC.G.S.X.
0.017e-136At5g18480831966PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process, biosynthetic process;C:membrane;PMFVOBC.G.S.X.
0.017e-136At4g08310826385unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.013e+034At5g67200836855leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVAC.G.S.X.
0.023e+034At5g50040835068invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.013e+034At3g18100821335MYB4R1 (myb domain protein 4R1)Member of the R2R3 transcription factor gene family.C.G.S.X.
0.013e+034At3g10940820265protein phosphatase-relatedF:phosphatase activity, protein tyrosine/serine/threonine phosphatase activity;P:protein amino acid dephosphorylation, dephosphorylation;C:chloroplast;MOPFVBAC.G.S.X.
0.013e+034At3g04740819634SWP (STRUWWELPETER)encodes a protein with similarities to subunits of the Mediator complex, required for RNA polymerase II recruitment at target promoters in response to specific activators. Lines carrying loss of function mutations in the gene have reduced cell numbers in aerial organs. On the other hand, lines overexpressing the gene have increased number of small cells in clusters, suggesting cell division is more unsynchronized in the overexpressors.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.024e-344Glycine maxGma.14855.1.S1_atBU550191--3e-43At4g33680AGD2 (ABERRANT GROWTH AND DEATH 2)C.G.S.X.
0.021e+034Hordeum vulgareContig12544_s_atContig12544--2e+1At5g03100F-box family proteinC.G.S.X.
0.062e-242Oryza sativaOs03g0299900AK069075.1-Aminotransferase, class I and II domain containingprotein4e-12At4g33680AGD2 (ABERRANT GROWTH AND DEATH 2)C.G.S.X.
0.354e-1273Populus trichocarpaPtpAffx.221973.1.S1_atpmrna39120hypothetical protein-3e-12At2g13810ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1)C.G.S.X.
0.022e-138Triticum aestivumTaAffx.128538.3.S1_atCA664295--4e+0At3g14280unknown proteinC.G.S.X.
0.022e-136Vitis vinifera1622457_atCB974646hypothetical protein LOC100252678-8e-10At1g69030-C.G.S.X.
0.025e+032Zea maysZmAffx.1538.1.S1_at40794996-128--3e+0At3g21730dihydroneopterin aldolase family proteinC.G.S.X.
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Biological processes

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ECCGO IDProcess Name
LGO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00006Link to KaPPA-View 4Glutamine and glutamate metabolism/Nitrate assimilation
00011Link to KaPPA-View 4Aspartate and asparagine metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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