CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g13640

Gene name Golgi GDP mannose transporter (GONST1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g13640 815849 Golgi GDP mannose transporter (GONST1) F:unknown;P:transcription;C:nucleus;OMBPFVA S.X. H.G.
0.80 89.8 At3g28280 822454 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.79 89.1 At5g44330 834458 male sterility MS5 family protein F:binding;P:biological_process unknown;C:unknown;POBA S.X. H.G.
0.78 88.6 At2g40440 818638 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.78 88.6 At4g25510 828655 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.77 88.0 At1g33820 840277 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBP S.X. H.G.
0.77 88.0 At4g02970 828121 AT7SL-1 (Arabidopsis 7SL RNA 1) Signal recognition particle. Type 4 of RNA polymerase III dependent genes. S.X. H.G.
0.76 87.4 At5g37860 833764 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;POBFM S.X. H.G.
0.75 86.9 At3g57900 824959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.74 86.1 At1g29730 839851 ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
502.5 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
348.8 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
339.2 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
338.9 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
320.3 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
291.2 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
284.6 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
269.7 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
248.1 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
244.5 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.94 0 1865 At5g27310 832789 - F:molecular_function unknown;P:transcription;C:plasma membrane;OMPBF C.G. S.X.
0.92 0 1828 At2g27780 817325 - F:molecular_function unknown;P:transcription;C:nucleus;OMPBFAV C.G. S.X.
0.02 9e-3 42 At2g32820 817843 - F:unknown;P:transcription;C:nucleus;P C.G. S.X.
0.01 9e-3 42 At1g63300 842636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPAV C.G. S.X.
0.02 1e-1 38 At4g09040 826483 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPFOBA C.G. S.X.
0.02 1e-1 38 At3g52400 824405 SYP122 (SYNTAXIN OF PLANTS 122) syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway C.G. S.X.
0.02 1e-1 38 At2g03750 814902 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:endomembrane system;MPOBF C.G. S.X.
0.01 1e-1 38 At1g74600 843800 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-1 36 Glycine max Gma.5088.3.S1_at BI700788 - - 8e-1 At4g11700 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig25984_at Contig25984 - - 9e-1 At4g24380 unknown protein C.G. S.X.
0.01 1e+0 36 Oryza sativa Os.2952.2.S1_at - - - 0 C.G. S.X.
0.02 8e-1 36 Populus trichocarpa PtpAffx.76171.1.A1_at CV242058 hypothetical protein - 5e-3 At2g40080 ELF4 (EARLY FLOWERING 4) C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.85616.1.S1_at CA621132 - - 1e+0 At2g41730 unknown protein C.G. S.X.
0.02 4e-2 38 Vitis vinifera 1609896_at CD798234 hypothetical protein LOC100246650 - 1e-13 At1g79390 unknown protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.12905.1.S1_at CA401433 - - 9e-2 At3g56891 metal ion binding C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006350 The synthesis of either RNA on a template of DNA or DNA on a template of RNA.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage