CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g13620

Gene name ATCHX15

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At2g13620 815847 ATCHX15 member of Putative Na+/H+ antiporter family S.X. H.G.
0.67 81.6 At1g11250 837666 SYP125 (SYNTAXIN OF PLANTS 125) member of SYP12 Gene Family S.X. H.G.
0.67 81.6 At5g47470 834797 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BOPAM S.X. H.G.
0.61 76.7 At3g12160 820393 RABA4D (RAB GTPASE HOMOLOG A4D) Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity. S.X. H.G.
0.50 65.3 At4g30770 829200 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
374.8 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
262.5 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
211.7 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
192.0 100.0 E-MEXP-1138-raw-cel-1432773258
140.0 99.9 E-MEXP-1138-raw-cel-1432773290
136.6 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
123.4 99.9 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
120.4 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
118.1 99.9 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
116.6 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-3 46 At2g28170 817363 ATCHX7 member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 2e-2 42 At1g08140 837335 ATCHX6A (CATION/H+ EXCHANGER 6A) member of Putative Na+/H+ antiporter family C.G. S.X.
0.02 3e-1 38 At2g31910 817749 ATCHX21 (CATION/H+ EXCHANGER 21) member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 1e+0 36 At5g64260 836547 EXL2 (EXORDIUM LIKE 2) F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PB C.G. S.X.
0.01 1e+0 36 At5g19900 832112 PRLI-interacting factor, putative F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVA C.G. S.X.
0.01 1e+0 36 At5g04560 830335 DME (DEMETER) Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. C.G. S.X.
0.01 1e+0 36 At4g00330 828125 CRCK2 high overall homology to CRCK1 C.G. S.X.
0.01 1e+0 36 At4g23700 828470 ATCHX17 (CATION/H+ EXCHANGER 17) member of Putative Na+/H+ antiporter family C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Glycine max GmaAffx.82556.1.S1_at BM094653 - - 3e+0 At4g31380 FLP1 (FPF1-LIKE PROTEIN 1) C.G. S.X.
0.01 6e-1 36 Hordeum vulgare Contig9818_at Contig9818 - - 3e-6 At4g08350 GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) C.G. S.X.
0.01 2e+0 36 Oryza sativa Os05g0299100 9633.m02074 - Hypothetical protein 4e-3 At3g25070 RIN4 (RPM1 INTERACTING PROTEIN 4) C.G. S.X.
0.29 1e-22 109 Populus trichocarpa PtpAffx.207057.1.S1_at pmrna13986 cation proton exchanger - 1e-22 At2g13620 ATCHX15 C.G. S.X.
0.02 1e+0 36 Triticum aestivum Ta.8019.1.A1_at BQ161134 - - 2e+0 At3g15690 biotin carboxyl carrier protein of acetyl-CoA carboxylase-related C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1617046_at CF512505 hypothetical protein LOC100244517 - 2e-1 At1g68160 unknown protein C.G. S.X.
0.01 2e+0 34 Zea mays ZmAffx.537.1.A1_at AI711809 - - 3e+0 At5g47610 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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