CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g13570

Gene name NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At2g13570 815843 NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MOPF S.X. H.G.
0.89 94.6 At1g26480 839189 GRF12 (GENERAL REGULATORY FACTOR 12) 14-3-3 protein GF14iota (grf12) S.X. H.G.
0.89 94.6 At4g29340 829055 PRF4 (PROFILIN 4) Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining. S.X. H.G.
0.67 81.6 At5g17480 831614 APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1) F:calcium ion binding;P:biological_process unknown;C:cytoplasm;MPFOB S.X. H.G.
0.30 32.1 At2g19770 816496 PRF5 (PROFILIN5) Encodes profilin 5, originally named profilin 4 (PRO4/PFN4). Low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Pollen-specific plant profilin present predominantly in mature pollen and growing pollen tubes. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
429.6 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
382.5 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
154.9 99.9 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
148.8 99.9 GSM131592 ATGE_36_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
129.3 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
126.8 99.9 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
123.4 99.9 E-MEXP-1138-raw-cel-1432773322
104.3 99.9 E-MEXP-1138-raw-cel-1432773258
98.5 99.9 E-MEXP-1138-raw-cel-1432773290
96.8 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 1e-22 107 At4g14540 827101 NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOB C.G. S.X.
0.15 6e-12 71 At3g53340 824502 NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:intracellular, nucleus;MPFO C.G. S.X.
0.16 1e-9 63 At5g47640 834815 NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO C.G. S.X.
0.13 2e-8 59 At2g37060 818282 NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO C.G. S.X.
0.08 5e-6 52 At1g21970 838800 LEC1 (LEAFY COTYLEDON 1) Transcriptional activator of genes required for both embryo maturation and cellular differentiation. Sequence is similar to HAP3 subunit of the CCAAT-box binding factor. HAP3 subunit is divided into three domains: an amino-terminal A domain, a central B domain, and a carboxyl-terminal C domain. LEC1 shared high similarity with other HAP3 homologs only in central, B domain. LEC1 is required for the specification of cotyledon identity and the completion of embryo maturation. It was sufficient to induce embryogenic programs in vegetative cells, suggesting that LEC1 is a major embryonic regulator that mediates the switch between embryo and vegetative development. Mutants are desiccation intolerant, have trichomes on cotyledons and exhibit precocious meristem activation. Levels of the ABI3 and FUS3 transcripts were significantly reduced in developing siliques of the lec1-1 mutants, indicating that LEC1 down-regulates FUS3 and ABI3.When LEC1 is overexpressed from an inducible promoter, the expression of numerous genes involved in fatty acid biosynthesis is increased suggesting a role in positive regulation of FA biosynthesis. C.G. S.X.
0.07 8e-5 48 At2g47810 819393 NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO C.G. S.X.
0.07 8e-5 48 At1g09030 837424 NF-YB4 (NUCLEAR FACTOR Y, SUBUNIT B4) F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 1e-1 38 Glycine max Gma.12719.1.S1_at CD395490 - - 2e-24 At4g14540 NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3) C.G. S.X.
0.04 2e+0 32 Hordeum vulgare EBem10_SQ004_F11_at EBem10_SQ004_F11 - - 2e-2 At1g74530 unknown protein C.G. S.X.
0.07 2e-1 38 Oryza sativa OsAffx.23994.1.S1_x_at - - - 0 C.G. S.X.
0.37 1e-29 131 Populus trichocarpa PtpAffx.205132.1.S1_at pmrna10159 hypothetical protein - 3e-30 At2g13570 NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7) C.G. S.X.
0.03 8e-2 38 Triticum aestivum TaAffx.58038.1.S1_at CA622938 - - 7e-2 At2g13570 NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7) C.G. S.X.
0.08 2e-9 61 Vitis vinifera 1621148_at CB003641 - - 9e-30 At4g14540 NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3) C.G. S.X.
0.10 9e-3 40 Zea mays Zm.10383.2.S1_at BM332575 transcription factor subunit NF-YB2 - 3e-15 At3g53340 NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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