CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g13560

Gene name malate oxidoreductase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.26 24.4 At2g13560 815842 malate oxidoreductase, putative F:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:response to salt stress, malate metabolic process;C:mitochondrion, chloroplast;BOMPFA S.X. H.G.
0.46 59.8 At4g23460 828445 beta-adaptin, putative F:protein transporter activity, protein binding, clathrin binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:plasma membrane;MFOPBA S.X. H.G.
0.29 30.3 At3g13870 820600 RHD3 (ROOT HAIR DEFECTIVE 3) required for regulated cell expansion and normal root hair development. Encodes an evolutionarily conserved protein with putative GTP-binding motifs that is implicated in the control of vesicle trafficking between the endoplasmic reticulum and the Golgi compartments. S.X. H.G.
0.27 26.2 At1g71820 843512 SEC6 F:molecular_function unknown;P:pollen germination, pollen tube growth;C:plasma membrane, exocyst;MFOPBA S.X. H.G.
0.24 20.7 At4g00570 828222 malate oxidoreductase, putative F:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:oxidation reduction, malate metabolic process, metabolic process;C:mitochondrion, chloroplast;BOMPFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 98.8 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
6.7 98.7 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
5.3 98.3 GSM133819 Yang_1-4_old-pod_Rep2_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
5.2 98.2 GSM265412 Arabidopsis, whole roots, -Fe, replicate 2 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
5.2 98.2 GSM266665 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
5.2 98.2 GSM266669 Arabidopsis, root cells, cortex, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
5.2 98.2 GSM131539 ATGE_25_C GSE5630 AtGenExpress: Developmental series (leaves)
5.1 98.2 GSM133821 Yang_1-6_old-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
5.1 98.2 GSM142829 GM001_ATH1_A11-Torres-5N3 GSE6176 Impact of Type III effectors on plant defense responses
5.0 98.1 GSM131537 ATGE_25_A GSE5630 AtGenExpress: Developmental series (leaves)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 6e-5 50 At4g00570 828222 malate oxidoreductase, putative F:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:oxidation reduction, malate metabolic process, metabolic process;C:mitochondrion, chloroplast;BOMPFA C.G. S.X.
0.03 2e-4 48 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. C.G. S.X.
0.04 1e-2 42 At5g25880 832657 ATNADP-ME3 (NADP-malic enzyme 3) The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic and restricted in its expression by both developmental and cell-specific signals. C.G. S.X.
0.01 2e-1 38 At5g43100 834326 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPFO C.G. S.X.
0.01 2e-1 38 At2g45510 819159 CYP704A2 member of CYP704A C.G. S.X.
0.02 9e-1 36 At5g05710 830455 pleckstrin homology (PH) domain-containing protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MOPFV C.G. S.X.
0.01 9e-1 36 At4g18810 827615 binding / catalytic/ transcription repressor F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAM C.G. S.X.
0.01 9e-1 36 At3g02820 821018 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:cell cycle, replication fork protection, response to DNA damage stimulus;C:nucleus, chloroplast;MFPOBV C.G. S.X.
0.01 9e-1 36 At1g55930 842044 CBS domain-containing protein / transporter associated domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMFPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 4e-53 210 Glycine max GmaAffx.11325.1.S1_at AW351168 - - 2e-53 At2g13560 malate oxidoreductase, putative C.G. S.X.
0.30 2e-64 246 Hordeum vulgare Contig5489_at Contig5489 - - 7e-64 At2g13560 malate oxidoreductase, putative C.G. S.X.
0.27 3e-48 194 Oryza sativa Os07g0496200 AK061706.1 - NAD-dependent malic enzyme 62 kDa isoform,mitochondrial precursor (EC 1.1.1.39) (NAD-ME) 3e-48 At2g13560 malate oxidoreductase, putative C.G. S.X.
0.46 8e-141 502 Populus trichocarpa PtpAffx.149909.1.S1_s_at AJ773011 hypothetical protein - 3e-141 At2g13560 malate oxidoreductase, putative C.G. S.X.
0.30 8e-57 222 Triticum aestivum Ta.7720.1.S1_a_at AJ612921 - - 1e-56 At2g13560 malate oxidoreductase, putative C.G. S.X.
0.09 1e-28 127 Vitis vinifera 1621510_at CF405481 - - 9e-29 At2g13560 malate oxidoreductase, putative C.G. S.X.
0.10 7e-3 42 Zea mays Zm.3666.1.A1_at BG873898 hypothetical protein LOC100191942 - 1e-2 At2g13560 malate oxidoreductase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
C GO:0006108 The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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