CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g11910

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At2g11910 815665 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;BMOFPVA S.X. H.G.
0.61 76.7 At5g02530 831923 RNA and export factor-binding protein, putative F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA S.X. H.G.
0.46 59.8 At4g22140 828303 DNA binding / protein binding / zinc ion binding F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;MPFO S.X. H.G.
0.29 30.3 At4g28440 828961 DNA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;PAO S.X. H.G.
0.27 26.2 At1g74560 843797 NRP1 (NAP1-RELATED PROTEIN 1) Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP2. Bind histones Histone2A and Histone2B and associate with chromatin in vivo. S.X. H.G.
0.21 15.8 At1g09660 837494 KH domain-containing quaking protein, putative F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.1 98.9 E-MEXP-728-raw-cel-1062074089
8.0 98.9 E-TABM-19-raw-cel-489757149
8.0 98.9 GSM133942 Weigel_2-34_CHIP-214-A_Rep1_ATH1 GSE5746 FRI FLC combos
7.8 98.9 E-MEXP-728-raw-cel-1062073825
7.6 98.9 E-MEXP-728-raw-cel-1062074684
7.5 98.8 E-MEXP-728-raw-cel-1062074653
7.5 98.8 GSM311274 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
7.4 98.8 E-MEXP-728-raw-cel-1062074577
7.2 98.8 E-MEXP-728-raw-cel-1062074758
7.2 98.8 GSM131815 Quick_A56_3-2hr_Rep3_ATH1 GSE5638 Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 1e-3 44 At3g07120 819898 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVBA C.G. S.X.
0.04 4e-3 42 At5g15140 831366 aldose 1-epimerase family protein F:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA C.G. S.X.
0.05 4e-3 42 At5g23170 832381 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.02 4e-3 42 At4g17895 827513 UBP20 (UBIQUITIN-SPECIFIC PROTEASE 20) Encodes a ubiquitin-specific protease. C.G. S.X.
0.07 4e-3 42 At3g50550 824219 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA C.G. S.X.
0.04 4e-3 42 At3g07260 819914 forkhead-associated domain-containing protein / FHA domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOB C.G. S.X.
0.04 4e-3 42 At2g21420 816681 zinc finger protein-related F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMFPVA C.G. S.X.
0.02 2e-2 40 At5g50310 835096 kelch repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 4e-7 56 Glycine max GmaAffx.48247.1.S1_at BM309527 - - 3e-7 At2g11910 unknown protein C.G. S.X.
0.04 1e-4 46 Hordeum vulgare Contig17012_at Contig17012 - - 2e+0 At2g01275 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 1e-1 38 Oryza sativa OsAffx.31410.1.S1_at - - - 0 C.G. S.X.
0.04 2e-2 40 Populus trichocarpa Ptp.5788.2.S1_at BU834689 high mobility group family - 2e-18 At1g20696 HMGB3 (HIGH MOBILITY GROUP B 3) C.G. S.X.
0.05 7e-2 38 Triticum aestivum TaAffx.54099.2.S1_at CA685789 - - 2e-2 At2g19480 NAP1 C.G. S.X.
0.05 2e-2 38 Vitis vinifera 1608560_at CF405443 hypothetical protein LOC100250989 - 3e+0 At3g09890 ankyrin repeat family protein C.G. S.X.
0.04 4e-1 34 Zea mays Zm.2566.1.S1_at BM079352 - - 6e-7 At5g56950 NAP1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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