CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g07751

Gene name NADH-ubiquinone oxidoreductase chain 3, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g07751 815347 NADH-ubiquinone oxidoreductase chain 3, putative F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA S.X. H.G.
0.86 93.1 At2g07708 815383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.67 81.6 At2g07695 815371 cytochrome c oxidase subunit II, putative F:electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding;P:electron transport chain, respiratory electron transport chain;C:integral to membrane, membrane;MOFBP S.X. H.G.
0.67 81.6 At2g07716 3768419 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.25 22.6 At2g07674 815346 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PVMOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
120.2 99.9 GSM265414 Arabidopsis, root cells, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
65.6 99.8 GSM184908 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
58.7 99.8 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
54.8 99.8 GSM245924 csn4-1_mutant_dark replicate 3 GSE9728 COP9 signalosome (csn) mutant analysis
51.3 99.8 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
42.5 99.8 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
41.5 99.8 GSM131453 AtGen_6-9321_Heatstress-Roots-3.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
39.2 99.8 GSM131266 AtGen_6-1222_Cold(4°C)-Roots-1.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
39.2 99.8 GSM226548 Slice6JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
39.1 99.8 GSM131262 AtGen_6-1122_Cold(4°C)-Roots-0.5h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
1.00 0 708 Atmg00990 - - NADH dehydrogenase subunit 3 C.G. S.X.
0.12 3e-15 81 Atmg01000 - - hypothetical protein C.G. S.X.
0.01 2e-1 36 At1g53050 841739 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVA C.G. S.X.
0.02 7e-1 34 At4g03110 828090 RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA C.G. S.X.
0.02 7e-1 34 At3g18500 821380 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB C.G. S.X.
0.02 7e-1 34 At1g74960 843835 FAB1 (FATTY ACID BIOSYNTHESIS 1) Encodes a plastidic beta-ketoacyl-ACP synthase II, involved in fatty acid elongation from 16:0-ACP to 18:0-ACP. Homozygous knock-out mutants are embryo lethal, indicating early embryo development is sensitive to elevated 16:0. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 4e-117 420 Glycine max GmaAffx.40362.1.S1_at AW350757 - - 3e-159 Atmg00980 - C.G. S.X.
0.75 5e-142 502 Hordeum vulgare HVSMEk0018C05r2_at HVSMEk0018C05r2 - - 1e-142 Atmg00990 - C.G. S.X.
0.81 2e-150 531 Oryza sativa OsAffx.32273.1.A1_at - - - 0 C.G. S.X.
0.77 1e-110 398 Populus trichocarpa PtpAffx.3554.1.A1_at DN486226 - - 1e-111 Atmg00990 - C.G. S.X.
0.62 1e-110 398 Triticum aestivum Ta.24230.1.S1_at BJ271953 - - 1e-96 At2g07751 NADH-ubiquinone oxidoreductase chain 3, putative C.G. S.X.
0.06 4e-12 69 Vitis vinifera 1614731_at CD715536 - - 2e-55 Atmg00516 - C.G. S.X.
0.92 1e-139 494 Zea mays ZmAffx.1412.1.S1_at 40794996-87 - - 2e-139 At2g07751 NADH-ubiquinone oxidoreductase chain 3, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006120 The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00190 Oxidative phosphorylation
01100 Metabolic pathways
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