CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g07713

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.87 93.5 At2g07713 815387 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.78 88.6 At4g29710 829092 phosphodiesterase/nucleotide pyrophosphatase-related F:catalytic activity;P:metabolic process;C:cellular_component unknown;MBFPOV S.X. H.G.
0.77 88.0 At2g07685 3768050 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.77 88.0 At2g07728 815401 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.73 85.5 At3g01580 821107 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFM S.X. H.G.
0.72 84.8 At1g34140 840313 PAB1 (POLY(A) BINDING PROTEIN 1) polyadenylate-binding protein, putative / PABP, putative, non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from (Triticum aestivum) GI:1737492, (Nicotiana tabacum) GI:7673355, {Arabidopsis thaliana} SP:P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Only member of the class IV PABP family. S.X. H.G.
0.69 82.9 At4g07360 3770409 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.68 82.2 At3g47240 823877 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.68 82.2 At1g39190 3767119 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.67 81.6 At2g05010 3768267 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
422.2 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
401.2 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
363.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
353.7 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
353.7 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
314.2 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
284.7 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
250.4 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
245.1 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
225.6 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
1.00 0 732 Atmg00540 - - hypothetical protein C.G. S.X.
0.02 3e+0 32 At5g55330 835626 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related F:acyltransferase activity;P:biological_process unknown;C:thylakoid;BPOF C.G. S.X.
0.01 3e+0 32 At5g07660 830659 structural maintenance of chromosomes (SMC) family protein F:protein binding, two-component sensor activity, ATP binding;P:signal transduction, chromosome segregation, chromosome organization;C:chromosome, nucleus, membrane;MOBFPAV C.G. S.X.
0.01 3e+0 32 At5g49110 834970 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPV C.G. S.X.
0.02 3e+0 32 At4g31810 829310 enoyl-CoA hydratase/isomerase family protein F:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:mitochondrion;BOMFPA C.G. S.X.
0.03 1e+1 30 At5g16486 3770625 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e+1 30 At5g49650 835027 xylulose kinase, putative F:xylulokinase activity, phosphotransferase activity, alcohol group as acceptor;P:carbohydrate metabolic process, xylulose catabolic process;C:cellular_component unknown;BOMFPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Glycine max GmaAffx.54778.1.S1_at BI322039 - - 3e+0 Atmg00540 - C.G. S.X.
0.04 5e+0 30 Hordeum vulgare HVSMEi0015K09r2_at HVSMEi0015K09r2 - - 1e+1 Atmg00540 - C.G. S.X.
0.02 5e+0 32 Oryza sativa OsAffx.8320.1.S1_at - - - 0 C.G. S.X.
0.05 1e+0 34 Populus trichocarpa PtpAffx.219078.1.S1_at pmrna34887 hypothetical protein - 5e-1 Atmg00540 - C.G. S.X.
0.04 1e+1 30 Triticum aestivum TaAffx.78499.1.S1_at CA731637 - - 7e-1 At4g31370 FLA5 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 PRECURSOR) C.G. S.X.
0.04 8e-1 32 Vitis vinifera 1607823_s_at CF405744 hypothetical protein LOC100263158 - 1e+0 At5g59000 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 2e+1 28 Zea mays ZmAffx.880.1.S1_at AI770800 protein kinase-like - 3e+0 At3g17100 transcription factor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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