CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g07706

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At2g07706 815381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.61 76.7 At2g07686 3768051 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.57 73.8 At2g07697 3768071 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.43 55.3 At5g08490 830748 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF S.X. H.G.
0.40 50.8 At2g07691 815367 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
467.3 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
466.2 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
446.9 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
403.0 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
385.4 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
364.5 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
344.6 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
338.0 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
253.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
225.3 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.47 6e-170 597 Atmg00470 - - hypothetical protein C.G. S.X.
0.03 1e-1 38 At4g33925 829537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPAOF C.G. S.X.
0.04 5e-1 36 At2g07825 6240956 unknown protein F:unknown;P:unknown;C:unknown C.G. S.X.
0.02 5e-1 36 At1g71150 843455 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBO C.G. S.X.
0.01 5e-1 36 At1g28420 839740 HB-1 (homeobox-1) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA C.G. S.X.
0.01 2e+0 34 At5g44320 834457 eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative F:translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOFP C.G. S.X.
0.01 2e+0 34 At3g22200 821784 POP2 (POLLEN-PISTIL INCOMPATIBILITY 2) Genetically redundant with POP3;mediates pollen tube guidance. Double mutants are self sterile; gamma-aminobutyrate transaminase subunit precursor; nuclear gene for mitochondrial product. Encodes gamma-aminobutyrate transaminase that uses pyruvate instead of alpha-ketoglutarate as cosubstrate. Mutations in POP2/HER1 render roots resistant to the inhibitory growth effects of the volatile organic compound E-2-hexenal implicated in plant defense. C.G. S.X.
0.01 2e+0 34 At3g49220 824083 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.02 2e+0 34 At1g71980 843529 protease-associated zinc finger (C3HC4-type RING finger) family protein F:peptidase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;OMPFBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 34 Glycine max GmaAffx.59698.1.A1_at BI967398 - - 2e-1 At1g60815 RALFL7 (RALF-LIKE 7) C.G. S.X.
0.02 9e-1 34 Hordeum vulgare Contig13720_at Contig13720 - - 1e+0 At4g18620 - C.G. S.X.
0.03 9e-1 36 Oryza sativa OsAffx.27796.1.S1_at - - - 0 C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.214648.1.S1_s_at pmrna28449 - - 3e-2 At2g07706 unknown protein C.G. S.X.
0.02 7e+0 32 Triticum aestivum TaAffx.108207.1.S1_at CA690703 - - 2e-8 At5g44340 TUB4 C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1613808_at CF513574 hypothetical protein LOC100241474 - 2e-8 At3g51370 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.03 5e-2 38 Zea mays ZmAffx.1420.1.S1_at 40794996-95 - - 5e-2 At2g07706 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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