CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g07698

Gene name ATP synthase alpha chain, mitochondrial, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.69 82.9 At2g07698 815374 ATP synthase alpha chain, mitochondrial, putative F:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAF S.X. H.G.
0.88 94.0 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. S.X. H.G.
0.85 92.4 At2g25650 817106 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA S.X. H.G.
0.83 91.4 At1g15200 838086 protein-protein interaction regulator family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.82 90.9 At1g28420 839740 HB-1 (homeobox-1) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA S.X. H.G.
0.79 89.1 At1g15940 838164 binding F:binding;P:biological_process unknown;C:unknown;MOBFPVA S.X. H.G.
0.75 86.9 At5g60030 836125 unknown protein F:unknown;P:unknown;C:unknown;MOFBPVA S.X. H.G.
0.72 84.8 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.72 84.8 At5g23680 832433 sterile alpha motif (SAM) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFV S.X. H.G.
0.72 84.8 At2g40650 818660 pre-mRNA splicing factor PRP38 family protein F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
161.3 99.9 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
148.1 99.9 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
135.5 99.9 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
133.5 99.9 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
124.9 99.9 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
121.1 99.9 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
117.9 99.9 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
113.2 99.9 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
112.0 99.9 GSM284397 Arabidopsis GGSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
105.4 99.9 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.78 0 2976 Atmg01190 - - ATPase subunit 1 C.G. S.X.
0.51 0 1499 Atmg01200 - - hypothetical protein C.G. S.X.
0.05 2e-8 61 Atcg00120 - - Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast. C.G. S.X.
0.01 2e-2 42 At2g42370 818838 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MOPBFA C.G. S.X.
0.01 3e-1 38 At2g25200 817058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 1e+0 36 At1g09810 837511 ECT11 (evolutionarily conserved C-terminal region 11) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF C.G. S.X.
0.01 5e+0 34 At5g19170 832037 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB C.G. S.X.
0.01 5e+0 34 At5g66630 836795 DAR5 (DA1-RELATED PROTEIN 5) F:zinc ion binding;P:unknown;C:unknown;PMOBF C.G. S.X.
0.01 5e+0 34 At3g24340 822023 chr40 (chromatin remodeling 40) F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 4e-4 48 Glycine max HgAffx.21784.1.S1_at BI704112 - - 5e-5 Atmg01190 - C.G. S.X.
0.14 7e-53 208 Hordeum vulgare S0000200012C05F1_at S0000200012C05F1 - - 3e-53 Atmg01190 - C.G. S.X.
0.71 0 2085 Oryza sativa OsAffx.32306.1.A1_at - - - 0 C.G. S.X.
0.51 0 1152 Populus trichocarpa Ptp.5733.1.S1_s_at AJ777863 hypothetical protein - 0 Atmg01190 - C.G. S.X.
0.01 5e+0 34 Triticum aestivum TaAffx.57053.1.S1_at CA637593 - - 3e-1 At4g29410 60S ribosomal protein L28 (RPL28C) C.G. S.X.
0.02 2e-11 69 Vitis vinifera 1613458_at CD720192 - - 0 Atmg00900 - C.G. S.X.
0.72 0 2022 Zea mays ZmAffx.1313.1.S1_s_at 40794996-141 - - 0 Atmg01190 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0015986 The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
L GO:0015992 The directed movement of protons (hydrogen ions) into, out of, within or between cells.
L GO:0046034 The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00190 Oxidative phosphorylation
01100 Metabolic pathways
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