Gene omics information

Query gene ID At2g06510
Gene name RPA1A (REPLICATION PROTEIN A 1A)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g06510815209RPA1A (REPLICATION PROTEIN A 1A)Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I.S.X.H.G.
0.4558.3At4g01880828223methyltransferaseF:methyltransferase activity;P:tRNA processing;C:unknown;MOFPABS.X.H.G.
0.3846.7At2g05120815060-F:unknown;P:unknown;C:chloroplast;MPOS.X.H.G.
0.3745.0At5g20930832217TSL (TOUSLED)Nuclear serine/threonine protein kinase that requires a coiled-coil region for oligomerization and catalytic activity. Required for leaf and flower development. Expression localized to the developing style by stage 13.S.X.H.G.
0.3439.8At4g09140826493MLH1 (MUTL-HOMOLOGUE 1)Encodes a protein with similarity to Mut1 DNA mismatch repair protein, from E.coli. The protein is expressed during prophase I of meiosis, colocalizes with MLH3 throughout pachytene and is dependent on MLH3 for proper localization.S.X.H.G.
0.3338.1At5g20170832140unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFS.X.H.G.
0.3338.1At3g17450821009hAT dimerisation domain-containing proteinF:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMVFBS.X.H.G.
0.3235.7At3g48150823970APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8)anaphase-promoting complex or cyclosome subunitS.X.H.G.
0.3032.1At3g12380820416ATARP5 (ACTIN-RELATED PROTEIN 5)Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family.S.X.H.G.
0.3032.1At1g56350842089peptide chain release factor, putativeF:translation release factor activity, codon specific, translation release factor activity;P:translational termination;C:cytoplasm;OBMFPVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
137.099.9GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
74.999.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
68.099.9GSM133950Murray_2-6_T10-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
61.599.8GSM133949Murray_2-5_T8-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
51.899.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
51.499.8GSM133948Murray_2-4_T6-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
51.299.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.199.8GSM133952Murray_2-8_T14-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
49.999.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
48.399.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.052e-552At5g45400834576replication protein, putativeF:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPFOABC.G.S.X.
0.016e-240At5g43190834337F-box family protein (FBX6)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PFOC.G.S.X.
0.011e+036At3g57550824922AGK2 (GUANYLATE KINASE)guanylate kinaseC.G.S.X.
0.011e+036At1g06020837111pfkB-type carbohydrate kinase family proteinF:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:unknown;BOPAMFC.G.S.X.
0.011e+036At1g62710842569BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.C.G.S.X.
0.014e+034At5g28320832916unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBAVC.G.S.X.
0.014e+034At5g28400832925unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.102e-656Glycine maxGmaAffx.73048.1.S1_atBE474305--5e-7At2g06510RPA1A (REPLICATION PROTEIN A 1A)C.G.S.X.
0.017e+032Hordeum vulgareContig23926_atContig23926--9e-7At4g18570proline-rich family proteinC.G.S.X.
0.114e-1791Oryza sativaOs02g0776800AB042415.1-Replication protein A 70kDa3e-17At2g06510RPA1A (REPLICATION PROTEIN A 1A)C.G.S.X.
0.342e-61238Populus trichocarpaPtpAffx.216490.1.S1_atpmrna31278hypothetical protein-1e-61At2g06510RPA1A (REPLICATION PROTEIN A 1A)C.G.S.X.
0.023e-138Triticum aestivumTaAffx.85996.1.S1_atCA617725--5e-12At3g56150EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)C.G.S.X.
0.251e-28127Vitis vinifera1612761_atCD720350--1e-28At2g06510RPA1A (REPLICATION PROTEIN A 1A)C.G.S.X.
0.013e-240Zea maysZm.9723.1.A1_atBI992830hypothetical protein LOC100194108-1e-1At1g40087-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0007131The cell cycle process whereby double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity.
XGO:0007141A cell cycle process comprising the steps by which a cell progresses through male meiosis I, the first meiotic division in the male germline.
XGO:0009555The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates.
XGO:0048232Generation of the male gamete; specialised haploid cells produced by meiosis and along with a female gamete takes part in sexual reproduction.
XGO:0051026The cell cycle process whereby a connection between chromatids forms, indicating where an exchange of homologous segments has taken place by the crossing-over of non-sister chromatids.
CGO:0006260The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
03030Link to KEGG PATHWAYDNA replication
03420Link to KEGG PATHWAYNucleotide excision repair
03430Link to KEGG PATHWAYMismatch repair
03440Link to KEGG PATHWAYHomologous recombination
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