CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g04870

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g04870 815034 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
0.82 90.9 At5g35290 833483 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.80 89.8 At3g43150 823381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.78 88.6 At3g50320 824194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.77 88.0 At5g27190 3770742 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.76 87.4 At1g35614 840459 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.75 86.9 At1g44990 841064 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system S.X. H.G.
0.69 82.9 At4g08890 3769919 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.64 78.9 At5g27340 832792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.40 50.8 At5g35010 833446 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
903.6 100.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
315.5 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
275.4 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
254.2 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
237.9 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
237.2 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
197.5 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
194.3 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
192.9 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
189.8 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e+0 32 At5g46600 834703 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOF C.G. S.X.
0.03 2e+0 32 At5g17710 831638 EMB1241 (embryo defective 1241) F:protein binding, chaperone binding, protein homodimerization activity, adenyl-nucleotide exchange factor activity;P:embryonic development ending in seed dormancy, protein folding;C:thylakoid, chloroplast, chloroplast stroma;BOMFPAV C.G. S.X.
0.01 2e+0 32 At2g19090 816426 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMOFBV C.G. S.X.
0.02 6e+0 30 At5g15550 831408 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:nucleolus, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA C.G. S.X.
0.01 6e+0 30 At5g07140 830605 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.04 6e+0 30 At5g49260 834986 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 6e+0 30 At5g62030 836323 diphthamide synthesis DPH2 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFAP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-1 34 Glycine max GmaAffx.29942.1.S1_at AW567850 - - 1e+0 At2g04870 unknown protein C.G. S.X.
0.04 2e-1 34 Hordeum vulgare HVSMEn0006E24f2_x_at HVSMEn0006E24f2 - - 1e+0 At2g04870 unknown protein C.G. S.X.
0.08 3e+0 32 Oryza sativa OsAffx.31844.1.S1_at - - - 0 C.G. S.X.
0.05 4e-2 38 Populus trichocarpa Ptp.2776.1.S1_at BU867047 - - 6e-2 At2g04870 unknown protein C.G. S.X.
0.05 7e+0 30 Triticum aestivum Ta.30253.1.A1_at BG906702 - - 1e+1 At5g04340 ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6) C.G. S.X.
0.08 7e+0 28 Vitis vinifera 1620940_at CF201899.1 - - 2e+1 At5g66990 RWP-RK domain-containing protein C.G. S.X.
0.04 1e+1 28 Zea mays ZmAffx.101.1.A1_at AI665502 - - 3e+0 At5g24310 ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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