Gene omics information

Query gene ID At2g04420
Gene name nucleic acid binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3541.6At2g04420814982nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:mitochondrion;PBOS.X.H.G.
0.5773.8At5g34895833430transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5570.6At3g47270823880transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5570.6At4g05580825912transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5065.3At2g022003768149transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
570.0100.0GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
468.5100.0GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
399.1100.0GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
368.6100.0GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
327.8100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
285.4100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
277.2100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
270.1100.0GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
268.8100.0GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
193.9100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.132e-550At3g25270822121nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBAOC.G.S.X.
0.028e-238At3g45710823713proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMOFAC.G.S.X.
0.023e-136At4g37510829906ribonuclease III family proteinF:RNA binding, ribonuclease III activity;P:RNA processing;C:chloroplast;BOFPC.G.S.X.
0.023e-136At2g33160817877glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity, nucleic acid binding;P:carbohydrate metabolic process;C:endomembrane system;PFBOMAC.G.S.X.
0.083e-136At1g27220839611paired amphipathic helix repeat-containing proteinF:nucleic acid binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOBC.G.S.X.
0.011e+034At5g37470833724unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.071e+034At3g32130822976-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.011e+034At2g35650818134ATCSLA07 (CELLULOSE SYNTHASE LIKE)a member of Glycosyltransferase- Family 2 and encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein. Mutants exhibit defects in pollen tube growth and embryo development. The defective embryonic development was associated with reduced proliferation and failed cellularization of the endosperm.C.G.S.X.
0.021e+034At1g66300842947F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxHgAffx.22681.1.S1_atBI748872--1e+0At2g04420nucleic acid bindingC.G.S.X.
0.033e+032Hordeum vulgareHVSMEb0014C01r2_atHVSMEb0014C01r2--2e+0At2g04420nucleic acid bindingC.G.S.X.
0.033e+034Oryza sativaOsAffx.19878.1.A1_at---0C.G.S.X.
0.022e+034Populus trichocarpaPtpAffx.74227.1.A1_atCV274267hypothetical protein-2e+0At2g04420nucleic acid bindingC.G.S.X.
0.031e+034Triticum aestivumTaAffx.112812.1.S1_atCA620452--3e+0At1g22450COX6B (CYTOCHROME C OXIDASE 6B)C.G.S.X.
0.032e+032Vitis vinifera1616181_atCF414551hypothetical protein LOC100244265-4e-3At3g08980signal peptidase I family proteinC.G.S.X.
0.036e-134Zea maysZm.9118.1.A1_atBM336433hypothetical protein LOC100273366-2e-6At3g25920RPL15C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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