CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g04160

Gene name AIR3

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g04160 814953 AIR3 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell. S.X. H.G.
0.39 48.4 At5g36880 833655 acetyl-CoA synthetase, putative / acetate-CoA ligase, putative F:acetate-CoA ligase activity, catalytic activity, AMP binding;P:metabolic process;C:cytosol, chloroplast stroma, chloroplast;BOMFPAV S.X. H.G.
0.38 46.7 At2g36580 818231 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:plasma membrane;BOMPFA S.X. H.G.
0.38 46.7 At2g47650 819378 UXS4 (UDP-XYLOSE SYNTHASE 4) encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. S.X. H.G.
0.36 43.6 At3g11330 820306 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:unknown;MPBOFAV S.X. H.G.
0.31 33.8 At3g17240 820984 mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) lipoamide dehydrogenase precursor S.X. H.G.
0.29 30.3 At2g44350 819042 ATCS encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA. S.X. H.G.
0.27 26.2 At1g63010 842604 SPX (SYG1/Pho81/XPR1) domain-containing protein F:unknown;P:unknown;C:vacuolar membrane, plant-type vacuole;BFOPMA S.X. H.G.
0.27 26.2 At4g35260 829679 IDH1 (ISOCITRATE DEHYDROGENASE 1) NAD+ dependent isocitrate dehydrogenase subunit 1 (IDH1) S.X. H.G.
0.22 17.5 At3g13790 820591 ATBFRUCT1 Encodes a protein with invertase activity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
111.3 99.9 GSM218590 Protoplasted root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
84.7 99.9 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
79.6 99.9 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
76.8 99.9 GSM184478 Lateral Root Cap root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
75.8 99.9 E-MEXP-791-raw-cel-1122937569
68.6 99.9 GSM205160 protoplast_controlDNA_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
63.3 99.8 GSM184484 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
57.1 99.8 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
56.6 99.8 GSM266662 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
52.8 99.8 E-MEXP-791-raw-cel-1122937533
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 1e-9 65 At1g20150 838605 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.03 3e-4 48 At5g59810 836102 SBT5.4 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOFAM C.G. S.X.
0.02 1e-3 46 At5g45650 834605 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.01 2e-2 42 At5g03620 831777 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.03 7e-2 40 At5g59090 836026 ATSBT4.12 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM C.G. S.X.
0.01 7e-2 40 At3g46850 823838 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.02 3e-1 38 At5g45640 834604 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPFOMA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 3e-11 71 Glycine max Gma.2414.1.S1_at BU551192 - - 1e-11 At2g04160 AIR3 C.G. S.X.
0.02 2e+0 34 Hordeum vulgare HV_CEb0024A10r2_at HV_CEb0024A10r2 - - 4e+0 At3g62800 DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4) C.G. S.X.
0.04 4e-5 52 Oryza sativa Os02g0198700 AK120287.1 - Subtilisin-like protease 2e-5 At2g04160 AIR3 C.G. S.X.
0.07 7e-6 54 Populus trichocarpa PtpAffx.224891.1.S1_at pmrna43802 hypothetical protein - 3e-4 At5g59810 SBT5.4 C.G. S.X.
0.02 2e-2 42 Triticum aestivum Ta.8324.2.S1_at CD874617 - - 9e-3 At2g04160 AIR3 C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1619687_at CD798741 hypothetical protein LOC100242388 - 2e+0 At5g53880 unknown protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.2024.1.S1_at CF972459 - - 4e-1 At1g61415 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010102 The process by which the anatomical structures of lateral root are generated and organized. Morphogenesis pertains to the creation of form. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper.
X GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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