Gene omics information

Query gene ID At2g04160
Gene name AIR3
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g04160814953AIR3isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.S.X.H.G.
0.3948.4At5g36880833655acetyl-CoA synthetase, putative / acetate-CoA ligase, putativeF:acetate-CoA ligase activity, catalytic activity, AMP binding;P:metabolic process;C:cytosol, chloroplast stroma, chloroplast;BOMFPAVS.X.H.G.
0.3846.7At2g36580818231pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:plasma membrane;BOMPFAS.X.H.G.
0.3846.7At2g47650819378UXS4 (UDP-XYLOSE SYNTHASE 4)encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.S.X.H.G.
0.3643.6At3g11330820306leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:unknown;MPBOFAVS.X.H.G.
0.3133.8At3g17240820984mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)lipoamide dehydrogenase precursorS.X.H.G.
0.2930.3At2g44350819042ATCSencodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA.S.X.H.G.
0.2726.2At1g63010842604SPX (SYG1/Pho81/XPR1) domain-containing proteinF:unknown;P:unknown;C:vacuolar membrane, plant-type vacuole;BFOPMAS.X.H.G.
0.2726.2At4g35260829679IDH1 (ISOCITRATE DEHYDROGENASE 1)NAD+ dependent isocitrate dehydrogenase subunit 1 (IDH1)S.X.H.G.
0.2217.5At3g13790820591ATBFRUCT1Encodes a protein with invertase activity.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
111.399.9GSM218590Protoplasted root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
84.799.9GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
79.699.9GSM204026protoplast_control_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
76.899.9GSM184478Lateral Root Cap root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
75.899.9E-MEXP-791-raw-cel-1122937569
68.699.9GSM205160protoplast_controlDNA_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
63.399.8GSM184484Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
57.199.8GSM205156protoplast_controlDNA_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
56.699.8GSM266662Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
52.899.8E-MEXP-791-raw-cel-1122937533
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.031e-965At1g20150838605subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMC.G.S.X.
0.033e-448At5g59810836102SBT5.4F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOFAMC.G.S.X.
0.021e-346At5g45650834605subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMC.G.S.X.
0.012e-242At5g03620831777subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMC.G.S.X.
0.037e-240At5g59090836026ATSBT4.12F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAMC.G.S.X.
0.017e-240At3g46850823838subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMC.G.S.X.
0.023e-138At5g45640834604subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPFOMAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.083e-1171Glycine maxGma.2414.1.S1_atBU551192--1e-11At2g04160AIR3C.G.S.X.
0.022e+034Hordeum vulgareHV_CEb0024A10r2_atHV_CEb0024A10r2--4e+0At3g62800DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4)C.G.S.X.
0.044e-552Oryza sativaOs02g0198700AK120287.1-Subtilisin-like protease2e-5At2g04160AIR3C.G.S.X.
0.077e-654Populus trichocarpaPtpAffx.224891.1.S1_atpmrna43802hypothetical protein-3e-4At5g59810SBT5.4C.G.S.X.
0.022e-242Triticum aestivumTa.8324.2.S1_atCD874617--9e-3At2g04160AIR3C.G.S.X.
0.023e-136Vitis vinifera1619687_atCD798741hypothetical protein LOC100242388-2e+0At5g53880unknown proteinC.G.S.X.
0.012e+034Zea maysZm.2024.1.S1_atCF972459--4e-1At1g61415unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010102The process by which the anatomical structures of lateral root are generated and organized. Morphogenesis pertains to the creation of form. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper.
XGO:0009733A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
CGO:0006508The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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