CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g04039

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g04039 814937 unknown protein F:molecular_function unknown;P:unknown;C:chloroplast;BOP S.X. H.G.
0.40 50.8 At5g42070 834212 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO S.X. H.G.
0.21 15.8 At1g18060 838386 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;PBO S.X. H.G.
0.13 5.8 At2g21330 816672 fructose-bisphosphate aldolase, putative F:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, pentose-phosphate shunt;C:in 8 components;OMBPF S.X. H.G.
0.09 2.8 At5g43750 834396 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:chloroplast thylakoid membrane, chloroplast;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.4 99.6 GSM268008 Col-0, Time 0, rep-A GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
19.5 99.6 GSM268009 Col-0, Time 0, rep-B GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
14.2 99.4 GSM268010 Col-0, Time 0, rep-C GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
13.5 99.4 GSM151696 Col-0 uninoculated, biological replicate 3 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
13.2 99.4 GSM151695 Col-0 uninoculated, biological replicate 2 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
11.6 99.3 GSM133833 Walters_A-12-Kruger-MH3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
11.0 99.2 GSM142805 SS001_ATH1_A8-Smith-11 GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
10.7 99.2 GSM133823 Walters_A-02-Kruger-WL2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
10.3 99.2 GSM131468 AtGen_6-9612_Heatstress(3h)+21hrecovery-Shoots-24.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
10.0 99.2 GSM318345 ML_35DAS_2 GSE12676 Arabidopsis thaliana Ler developmental series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 1e-3 44 At4g30050 829128 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.03 5e-3 42 At5g30490 833136 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB C.G. S.X.
0.03 2e-2 40 At1g69080 843240 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PM C.G. S.X.
0.02 7e-2 38 At5g67330 836868 ATNRAMP4 Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination. C.G. S.X.
0.03 7e-2 38 At5g62780 836399 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;MOPBFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-1 38 Glycine max Gma.13881.1.S1_at CD408858 - - 1e-1 At2g04039 unknown protein C.G. S.X.
0.05 1e-1 36 Hordeum vulgare HVSMEa0005G02r2_at HVSMEa0005G02r2 - - 9e-2 At2g04039 unknown protein C.G. S.X.
0.06 1e-1 38 Oryza sativa OsAffx.8826.1.S1_at - - - 0 C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.211275.1.S1_at pmrna22117 hypothetical protein - 1e-8 At2g40700 DEAD/DEAH box helicase, putative (RH17) C.G. S.X.
0.04 2e-2 40 Triticum aestivum Ta.23766.1.S1_a_at CA663190 - - 1e-2 At4g12380 unknown protein C.G. S.X.
0.06 9e-2 36 Vitis vinifera 1621055_a_at CA813802 hypothetical LOC100263712 - 5e-1 At2g04039 unknown protein C.G. S.X.
0.03 5e-1 34 Zea mays Zm.10169.1.A1_at AI795322 - - 1e+0 At2g04039 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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