CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g03800

Gene name GEK1 (GEKO1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At2g03800 814906 GEK1 (GEKO1) encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype. S.X. H.G.
0.80 89.8 At2g44690 819077 ARAC9 A member of ROP GTPase gene family. S.X. H.G.
0.73 85.5 At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA S.X. H.G.
0.67 81.6 At1g44900 841056 ATP binding / DNA binding / DNA-dependent ATPase F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAV S.X. H.G.
0.53 68.6 At1g45180 841086 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB S.X. H.G.
0.50 65.3 At2g44830 819092 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, nucleus;MOPFBVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
103.7 99.9 E-MEXP-1797-raw-cel-1669767958
98.8 99.9 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
98.2 99.9 E-ATMX-31-raw-cel-1516947882
96.9 99.9 E-MEXP-1797-raw-cel-1669768048
93.3 99.9 E-MEXP-1797-raw-cel-1669767976
92.6 99.9 E-ATMX-31-raw-cel-1516947899
89.6 99.9 E-MEXP-1797-raw-cel-1669767994
88.9 99.9 E-MEXP-1797-raw-cel-1669767967
85.1 99.9 E-MEXP-1797-raw-cel-1669767940
80.7 99.9 E-ATMX-31-raw-cel-1516947916
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-3 44 At2g27040 817246 AGO4 (ARGONAUTE 4) AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens. C.G. S.X.
0.01 5e-1 36 At3g05660 819733 AtRLP33 (Receptor Like Protein 33) F:protein binding, kinase activity;P:signal transduction, defense response;C:chloroplast;PMOBFAV C.G. S.X.
0.02 2e+0 34 At5g16870 831550 aminoacyl-tRNA hydrolase F:aminoacyl-tRNA hydrolase activity;P:translation;C:unknown;OAMFPVB C.G. S.X.
0.01 2e+0 34 At5g49660 835028 leucine-rich repeat transmembrane protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e+0 34 At4g18160 827541 KCO6 Encodes AtTPK3 (KCO6), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins.AtTPK3 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo. C.G. S.X.
0.02 2e+0 34 At4g14860 827143 atofp11 (Arabidopsis thaliana ovate family protein 11) F:unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.02 2e+0 34 At3g16770 820929 ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3. C.G. S.X.
0.02 2e+0 34 At3g01400 821320 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MPOFB C.G. S.X.
0.01 2e+0 34 At2g31260 817683 APG9 (autophagy 9) Involved in autophagy, the process of vacuolar bulk degradation of cytoplasmic components. Mutant shows accelerated bolting and senescence. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-2 42 Glycine max Gma.7220.1.A1_s_at AI495461 - - 5e-3 At2g03800 GEK1 (GEKO1) C.G. S.X.
0.10 6e-5 48 Hordeum vulgare Contig8018_at Contig8018 - - 2e-4 At2g03800 GEK1 (GEKO1) C.G. S.X.
0.12 1e-9 65 Oryza sativa Os.8949.1.S1_at - - - 0 C.G. S.X.
0.23 8e-16 85 Populus trichocarpa PtpAffx.212649.1.S1_at pmrna24753 hypothetical protein - 6e-16 At2g03800 GEK1 (GEKO1) C.G. S.X.
0.09 3e-5 50 Triticum aestivum TaAffx.90052.1.S1_at BE216939 - - 3e-5 At2g03800 GEK1 (GEKO1) C.G. S.X.
0.06 1e-1 36 Vitis vinifera 1609793_at BQ792585 hypothetical protein LOC100245778 - 3e-1 At2g03800 GEK1 (GEKO1) C.G. S.X.
0.10 3e-6 52 Zea mays Zm.6401.2.S1_a_at BG266177 hypothetical protein LOC100193788 - 1e-5 At2g03800 GEK1 (GEKO1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009636 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage