CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g03500

Gene name myb family transcription factor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.21 15.8 At2g03500 814878 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;OFPMBAV S.X. H.G.
0.33 38.1 At4g17910 827515 transferase, transferring acyl groups F:transferase activity, transferring acyl groups;P:GPI anchor biosynthetic process;C:integral to membrane, endoplasmic reticulum membrane;MFPO S.X. H.G.
0.29 30.3 At4g13600 826993 - F:unknown;P:unknown;C:unknown;PFOBM S.X. H.G.
0.22 17.5 At4g20270 827774 BAM3 (BARELY ANY MERISTEM 3) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. S.X. H.G.
0.21 15.8 At1g23530 838962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.19 12.7 At1g79430 844281 APL (ALTERED PHLOEM DEVELOPMENT) Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
183.0 100.0 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
144.1 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
107.9 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
91.8 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
86.1 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
74.5 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
72.2 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
70.4 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.7 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.0 99.8 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-10 67 At4g37180 829872 myb family transcription factor myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen C.G. S.X.
0.03 1e-5 52 At1g13300 837890 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF C.G. S.X.
0.11 2e-4 48 At3g25790 822170 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM C.G. S.X.
0.01 4e-2 40 At2g42270 818828 U5 small nuclear ribonucleoprotein helicase, putative F:in 6 functions;P:unknown;C:unknown;BOMFAPV C.G. S.X.
0.09 4e-2 40 At1g25550 839142 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM C.G. S.X.
0.01 4e-2 40 At1g68740 843205 EXS family protein / ERD1/XPR1/SYG1 family protein Encodes PHO1;H1, a member of the PHO1 family. Involved in inorganic phosphate (Pi) transport and homeostasis. Complements pho1 mutation. C.G. S.X.
0.01 2e-1 38 At5g49930 835056 emb1441 (embryo defective 1441) F:zinc ion binding, nucleic acid binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;OMBFAPV C.G. S.X.
0.01 2e-1 38 At5g02480 831883 - F:unknown;P:unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-12 75 Glycine max GmaAffx.70843.1.S1_at BM188078 - - 2e-5 At1g25550 myb family transcription factor C.G. S.X.
0.09 1e-6 54 Hordeum vulgare Contig14220_at Contig14220 - - 2e-6 At2g03500 myb family transcription factor C.G. S.X.
0.12 2e-12 75 Oryza sativa Os01g0176700 AK109808.1 - Myb, DNA-binding domain containing protein 1e-12 At2g03500 myb family transcription factor C.G. S.X.
0.25 1e-27 125 Populus trichocarpa PtpAffx.206410.1.S1_at pmrna12734 hypothetical protein - 1e-27 At2g03500 myb family transcription factor C.G. S.X.
0.05 2e-7 57 Triticum aestivum Ta.28404.1.S1_s_at CD454641 - - 8e-12 At1g13300 myb family transcription factor C.G. S.X.
0.03 5e-2 38 Vitis vinifera 1610773_at CF517495 - - 1e+0 At4g11510 RALFL28 (ralf-like 28) C.G. S.X.
0.03 2e-5 50 Zea mays Zm.19076.1.A1_at CO522709 hypothetical protein LOC100280246 - 2e-3 At3g25790 myb family transcription factor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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