Gene omics information

Query gene ID At2g03500
Gene name myb family transcription factor
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2115.8At2g03500814878myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;OFPMBAVS.X.H.G.
0.3338.1At4g17910827515transferase, transferring acyl groupsF:transferase activity, transferring acyl groups;P:GPI anchor biosynthetic process;C:integral to membrane, endoplasmic reticulum membrane;MFPOS.X.H.G.
0.2930.3At4g13600826993-F:unknown;P:unknown;C:unknown;PFOBMS.X.H.G.
0.2217.5At4g20270827774BAM3 (BARELY ANY MERISTEM 3)Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function.S.X.H.G.
0.2115.8At1g23530838962unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.1912.7At1g79430844281APL (ALTERED PHLOEM DEVELOPMENT)Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
183.0100.0GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
144.199.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
107.999.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
91.899.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
86.199.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
74.599.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
72.299.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
70.499.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.799.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.099.8GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.032e-1067At4g37180829872myb family transcription factormyb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screenC.G.S.X.
0.031e-552At1g13300837890myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMFC.G.S.X.
0.112e-448At3g25790822170myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMC.G.S.X.
0.014e-240At2g42270818828U5 small nuclear ribonucleoprotein helicase, putativeF:in 6 functions;P:unknown;C:unknown;BOMFAPVC.G.S.X.
0.094e-240At1g25550839142myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMC.G.S.X.
0.014e-240At1g68740843205EXS family protein / ERD1/XPR1/SYG1 family proteinEncodes PHO1;H1, a member of the PHO1 family. Involved in inorganic phosphate (Pi) transport and homeostasis. Complements pho1 mutation.C.G.S.X.
0.012e-138At5g49930835056emb1441 (embryo defective 1441)F:zinc ion binding, nucleic acid binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;OMBFAPVC.G.S.X.
0.012e-138At5g02480831883-F:unknown;P:unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.081e-1275Glycine maxGmaAffx.70843.1.S1_atBM188078--2e-5At1g25550myb family transcription factorC.G.S.X.
0.091e-654Hordeum vulgareContig14220_atContig14220--2e-6At2g03500myb family transcription factorC.G.S.X.
0.122e-1275Oryza sativaOs01g0176700AK109808.1-Myb, DNA-binding domain containing protein1e-12At2g03500myb family transcription factorC.G.S.X.
0.251e-27125Populus trichocarpaPtpAffx.206410.1.S1_atpmrna12734hypothetical protein-1e-27At2g03500myb family transcription factorC.G.S.X.
0.052e-757Triticum aestivumTa.28404.1.S1_s_atCD454641--8e-12At1g13300myb family transcription factorC.G.S.X.
0.035e-238Vitis vinifera1610773_atCF517495--1e+0At4g11510RALFL28 (ralf-like 28)C.G.S.X.
0.032e-550Zea maysZm.19076.1.A1_atCO522709hypothetical protein LOC100280246-2e-3At3g25790myb family transcription factorC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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