Gene omics information

Query gene ID At2g03270
Gene name DNA-binding protein, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5673.0At2g03270814856DNA-binding protein, putativeF:nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding;P:unknown;C:cellular_component unknown;BMOFPAVS.X.H.G.
0.7385.5At1g05120839319SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinF:in 6 functions;P:unknown;C:unknown;MFBOPVAS.X.H.G.
0.7184.2At5g65000836624nucleotide-sugar transporter family proteinF:nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity;P:carbohydrate transport, nucleotide-sugar transport;C:integral to membrane, Golgi membrane;MPOFABS.X.H.G.
0.6882.2At5g49220834982unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.6882.2At1g0721083723230S ribosomal protein S18 familyF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOPMFS.X.H.G.
0.6781.6At3g01320821265SNL1 (SIN3-LIKE 1)Encodes SIN3-like 1, a homolog of the transcriptional repressor SIN3 (AT1G24190).S.X.H.G.
0.6579.6At5g58510835964unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBS.X.H.G.
0.6277.3At1g71350843476eukaryotic translation initiation factor SUI1 family proteinF:RNA binding, translation initiation factor activity;P:translational initiation;C:unknown;MFOPAS.X.H.G.
0.6277.3At5g55300835623TOP1ALPHA (DNA TOPOISOMERASE I ALPHA)Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition.S.X.H.G.
0.6176.7At2g30320817582tRNA pseudouridine synthase family proteinF:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:unknown;OBMFPAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
153.999.9E-ATMX-35-raw-cel-1574334832
84.199.9GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
76.399.9E-ATMX-35-raw-cel-1574334800
75.399.9E-ATMX-35-raw-cel-1574334816
74.299.9GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
71.799.9GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
71.299.9GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
67.999.9GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
62.499.8GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
62.199.8GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-242At5g53540835436MSP1 protein, putative / intramitochondrial sorting protein, putativeF:in 6 functions;P:proteolysis;C:endomembrane system;BOMFPAVC.G.S.X.
0.026e-240At2g17240816229unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBPFVC.G.S.X.
0.012e-138At5g56010835699HSP81-3a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl.C.G.S.X.
0.012e-138At5g56000835698heat shock protein 81-4 (HSP81-4)F:unfolded protein binding, ATP binding;P:protein folding;C:cytosol, apoplast, cell wall, nucleus, plasma membrane;OMBFPAVC.G.S.X.
0.012e-138At5g56030835701HSP81-2 (HEAT SHOCK PROTEIN 81-2)a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl.C.G.S.X.
0.012e-138At5g60920836213COB (COBRA)Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.C.G.S.X.
0.012e-138At3g544502745964transporterF:transporter activity;P:oligopeptide transport;C:membrane;BPOMFC.G.S.X.
0.012e-138At3g17920819843protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MBOFPVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.256e-43176Glycine maxGmaAffx.73807.1.S1_atAW508391--1e-43At2g03270DNA-binding protein, putativeC.G.S.X.
0.194e-23109Hordeum vulgareContig11436_atContig11436--5e-23At2g03270DNA-binding protein, putativeC.G.S.X.
0.304e-23111Oryza sativaOs03g0586900AK099721.1-Putative DNA helicase family protein3e-23At2g03270DNA-binding protein, putativeC.G.S.X.
0.435e-40167Populus trichocarpaPtpAffx.135342.1.S1_atCN550200hypothetical protein-2e-40At2g03270DNA-binding protein, putativeC.G.S.X.
0.161e-965Triticum aestivumTa.27678.1.S1_atBJ237635--1e-9At2g03270DNA-binding protein, putativeC.G.S.X.
0.023e-136Vitis vinifera1610666_atCF518956hypothetical protein LOC100259734-2e-8At5g49890CLC-C (CHLORIDE CHANNEL C)C.G.S.X.
0.012e+034Zea maysZm.943.1.A1_atBF729547CID11-1e+0At5g42240scpl42 (serine carboxypeptidase-like 42)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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