CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g03260

Gene name EXS family protein / ERD1/XPR1/SYG1 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g03260 814855 EXS family protein / ERD1/XPR1/SYG1 family protein F:unknown;P:unknown;C:integral to membrane;FMPO S.X. H.G.
0.36 43.6 At4g04670 825800 Met-10+ like family protein / kelch repeat-containing protein F:unknown;P:wybutosine biosynthetic process;C:cellular_component unknown;MOPFABV S.X. H.G.
0.35 41.6 At5g08510 830750 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMAB S.X. H.G.
0.33 38.1 At5g08270 830723 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO S.X. H.G.
0.31 33.8 At4g25120 828615 ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolase F:ATP-dependent DNA helicase activity, hydrolase activity, DNA binding, ATP binding;P:DNA repair;C:unknown;BOFAPMV S.X. H.G.
0.29 30.3 At5g19830 832103 aminoacyl-tRNA hydrolase F:aminoacyl-tRNA hydrolase activity;P:translation;C:mitochondrion;BOPFM S.X. H.G.
0.29 30.3 At5g26680 832721 endonuclease, putative F:5'-3' exonuclease activity, DNA binding, catalytic activity, nuclease activity;P:DNA repair;C:unknown;OMFBAPV S.X. H.G.
0.28 30.3 At4g34360 829586 protease-related F:methyltransferase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMPFA S.X. H.G.
0.27 26.2 At2g14050 815890 MCM9 F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:cellular_component unknown;MOBFAPV S.X. H.G.
0.26 24.4 At5g25480 832623 DNMT2 (DNA METHYLTRANSFERASE-2) Encodes a DNA methyltransferase homolog. Human Dnmt2 methylates tRNA-Asp and can methylate Arabidopsis tRNA-Asp in vitro. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
129.7 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
117.1 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
113.4 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
110.5 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
110.3 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
109.4 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
109.2 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
102.8 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
100.5 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
95.8 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.52 7e-64 246 At1g14040 837965 - F:unknown;P:unknown;C:integral to membrane;FMPO C.G. S.X.
0.46 7e-61 236 At2g03240 814853 - F:unknown;P:unknown;C:integral to membrane;MFPO C.G. S.X.
0.43 4e-56 220 At2g03250 814854 EXS family protein / ERD1/XPR1/SYG1 family protein F:unknown;P:unknown;C:integral to membrane;MFPOB C.G. S.X.
0.10 6e-21 103 At1g35350 840424 - F:unknown;P:unknown;C:integral to membrane;FMPOB C.G. S.X.
0.09 4e-19 97 At1g26730 839214 EXS family protein / ERD1/XPR1/SYG1 family protein F:unknown;P:unknown;C:integral to membrane, plasma membrane;FMPOB C.G. S.X.
0.11 5e-6 54 At4g25350 828638 SHB1 (SHORT HYPOCOTYL UNDER BLUE1) SHB1 encodes a nuclear and cytosolic protein that has motifs homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation phenotypes. Acts upstream of HFR1. Regulates seed development. C.G. S.X.
0.05 8e-5 50 At3g29060 822550 - F:unknown;P:unknown;C:integral to membrane;MFPOVBA C.G. S.X.
0.09 3e-4 48 At1g69480 843280 EXS family protein / ERD1/XPR1/SYG1 family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, plasma membrane;FMPOB C.G. S.X.
0.01 8e-2 40 At2g27010 817243 CYP705A9 member of CYP705A C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-7 57 Glycine max GmaAffx.77909.1.S1_at BG882051 - - 9e-11 At1g26730 EXS family protein / ERD1/XPR1/SYG1 family protein C.G. S.X.
0.01 1e-1 38 Hordeum vulgare Contig10240_at Contig10240 - - 1e+0 At1g80120 unknown protein C.G. S.X.
0.01 2e+0 36 Oryza sativa OsAffx.18684.1.S1_at - - - 0 C.G. S.X.
0.19 6e-25 117 Populus trichocarpa PtpAffx.207872.1.S1_at pmrna15627 pho1-like protein - 9e-17 At1g14040 - C.G. S.X.
0.02 2e-2 42 Triticum aestivum TaAffx.28157.1.S1_x_at CA664363 - - 3e-1 At2g36895 unknown protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1612310_at CA815999 hypothetical protein LOC100247320 - 1e-1 At1g11500 unknown protein C.G. S.X.
0.01 5e-4 46 Zea mays Zm.14354.3.S1_a_at AW172114 - - 2e-13 At4g33865 40S ribosomal protein S29 (RPS29C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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