Gene omics information

Query gene ID At2g03240
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g03240814853-F:unknown;P:unknown;C:integral to membrane;MFPOS.X.H.G.
0.2930.3At5g41060834108zinc finger (DHHC type) family proteinF:zinc ion binding;P:unknown;C:plasma membrane;MOFPS.X.H.G.
0.2014.4At5g23430832409transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAVS.X.H.G.
0.124.9At3g50780824242-F:unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.071.9At1g76380843970DNA-binding bromodomain-containing proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVS.X.H.G.
0.051.1At1g79820844321SGB1 (SUPPRESSOR OF G PROTEIN BETA1)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAVS.X.H.G.
0.010.2At5g42350834241kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
43.799.8GSM184897Arabidopsis, root cells, cortex, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
43.299.8GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
35.999.7GSM184921Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
25.299.6GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
21.499.6GSM184499Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
20.499.6GSM184924Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
20.099.6GSM242959Steroid day 3 (day3D1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
18.399.5GSM266669Arabidopsis, root cells, cortex, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
17.199.5GSM62704arf6 arf8 flowers_stage 13-14GSE2848Auxin Response Factor mediated flower gene expression
16.699.5GSM184919Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.680650At1g14040837965-F:unknown;P:unknown;C:integral to membrane;FMPOC.G.S.X.
0.461e-170601At2g03250814854EXS family protein / ERD1/XPR1/SYG1 family proteinF:unknown;P:unknown;C:integral to membrane;MFPOBC.G.S.X.
0.467e-61236At2g03260814855EXS family protein / ERD1/XPR1/SYG1 family proteinF:unknown;P:unknown;C:integral to membrane;FMPOC.G.S.X.
0.152e-1895At1g35350840424-F:unknown;P:unknown;C:integral to membrane;FMPOBC.G.S.X.
0.102e-1791At4g25350828638SHB1 (SHORT HYPOCOTYL UNDER BLUE1)SHB1 encodes a nuclear and cytosolic protein that has motifs homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation phenotypes. Acts upstream of HFR1. Regulates seed development.C.G.S.X.
0.064e-1377At3g29060822550-F:unknown;P:unknown;C:integral to membrane;MFPOVBAC.G.S.X.
0.151e-1275At1g26730839214EXS family protein / ERD1/XPR1/SYG1 family proteinF:unknown;P:unknown;C:integral to membrane, plasma membrane;FMPOBC.G.S.X.
0.045e-963At1g69480843280EXS family protein / ERD1/XPR1/SYG1 family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane, plasma membrane;FMPOBC.G.S.X.
0.023e-757At2g24440816980selenium bindingF:selenium binding;P:cell redox homeostasis;C:cellular_component unknown;MOFPBAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e-140Glycine maxGmaAffx.48172.1.S1_atBF009291--8e-4At1g35350-C.G.S.X.
0.014e-240Hordeum vulgareContig17336_atContig17336--4e+0At5g01580OSH1 (OAS HIGH ACCUMULATION 1)C.G.S.X.
0.026e-138Oryza sativaOs10g0440500AY224486.1-Heavy metal transport/detoxification proteindomain containing protein1e-2At2g39320OTU-like cysteine protease family proteinC.G.S.X.
0.222e-1895Populus trichocarpaPtpAffx.209153.1.S1_x_atpmrna18121pho1-like protein /// pho1-like protein-2e-18At2g03240-C.G.S.X.
0.031e+036Triticum aestivumTa.1006.1.S1_atCA630632--4e+0At3g23430PHO1 (phosphate 1)C.G.S.X.
0.014e-136Vitis vinifera1615874_atCF403960hypothetical protein LOC100244966-2e-127At1g07110F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)C.G.S.X.
0.043e-240Zea maysZm.11798.1.A1_atBM380830--1e-6At3g23430PHO1 (phosphate 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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