CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g03200

Gene name aspartyl protease family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.56 73.0 At2g03200 814849 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFMO S.X. H.G.
0.89 94.6 At5g44030 834426 CESA4 (CELLULOSE SYNTHASE A4) Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. S.X. H.G.
0.86 93.1 At5g67210 836856 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.86 93.1 At3g16920 820947 chitinase F:chitinase activity;P:cell wall macromolecule catabolic process;C:unknown;PBMOF S.X. H.G.
0.86 93.1 At5g15630 831417 IRX6 Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars. S.X. H.G.
0.84 91.9 At2g38080 818386 IRX12 (IRREGULAR XYLEM 12) Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype. S.X. H.G.
0.83 91.4 At4g27435 828852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.83 91.4 At5g03170 831914 FLA11 F:unknown;P:unknown;C:anchored to membrane;PBOMAF S.X. H.G.
0.82 90.9 At2g41610 818759 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.82 90.9 At3g50220 824184 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
386.5 100.0 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
266.9 100.0 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
212.2 100.0 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
176.3 100.0 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
163.2 99.9 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
125.3 99.9 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
113.4 99.9 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
99.7 99.9 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
94.1 99.9 E-MEXP-265-raw-cel-414618585
88.7 99.9 E-MEXP-265-raw-cel-414618693
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-2 40 At1g64830 842791 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
0.02 2e-1 38 At1g11450 837687 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM C.G. S.X.
0.01 7e-1 36 At4g31530 829280 binding / catalytic F:binding, catalytic activity;P:metabolic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOPMFA C.G. S.X.
0.01 7e-1 36 At3g20840 821632 PLT1 (PLETHORA 1) Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors. C.G. S.X.
0.02 3e+0 34 At5g10130 830877 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P C.G. S.X.
0.02 3e+0 34 At5g10760 830943 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFO C.G. S.X.
0.02 3e+0 34 At5g20640 832187 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P C.G. S.X.
0.01 3e+0 34 At5g35840 833570 PHYC (phytochrome defective c) Encodes the apoprotein of phytochrome;one of a family of photoreceptors that modulate plant growth and development. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max Gma.4884.2.S1_at CA799417 - - 2e-1 At1g47740 unknown protein C.G. S.X.
0.03 3e-1 36 Hordeum vulgare HVSMEn0021L12r2_at HVSMEn0021L12r2 - - 1e+1 At4g38960 zinc finger (B-box type) family protein C.G. S.X.
0.02 5e+0 34 Oryza sativa Os04g0612900 AK122039.1 - Conserved hypothetical protein 1e+0 At1g10940 SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4) C.G. S.X.
0.06 3e-7 57 Populus trichocarpa Ptp.1623.1.S1_at CV228007 hypothetical protein - 2e-7 At2g03200 aspartyl protease family protein C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.64419.1.S1_at BJ300336 - - 4e+0 At3g60280 UCC3 (UCLACYANIN 3) C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1608643_at CF373332 similar to phosphate/phosphoenolpyruvate translocator - 1e+0 At3g01550 PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.1743.1.A1_at BG840944 IAA19 - auxin-responsive Aux/IAA family member - 2e-9 At4g14550 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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