CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g02930

Gene name ATGSTF3 (GLUTATHIONE S-TRANSFERASE F3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At2g02930 814822 ATGSTF3 (GLUTATHIONE S-TRANSFERASE F3) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.50 65.3 At3g04720 819632 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. S.X. H.G.
0.33 38.1 At1g14870 838052 - F:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PMFO S.X. H.G.
0.20 14.4 At3g49110 824072 PRXCA (PEROXIDASE CA) Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response. S.X. H.G.
0.15 7.8 At3g26210 822222 CYP71B23 putative cytochrome P450 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
181.2 100.0 GSM176878 AWP_AL_Txed_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
93.5 99.9 GSM176880 AWP_Control_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
59.3 99.8 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
22.9 99.6 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
19.2 99.6 E-ATMX-34-raw-cel-1563627275
16.4 99.5 E-MEXP-807-raw-cel-1173272894
16.1 99.5 E-MEXP-807-raw-cel-1173273032
13.5 99.4 GSM39200 Col_C2 GSE2169 rre1 and rre2 mutants
11.9 99.3 E-MEXP-1784-raw-cel-1661573018
11.6 99.3 GSM131162 AtGen_C-12_3-Pi-6_REP3_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.94 0 989 At4g02520 827931 ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. C.G. S.X.
0.41 7e-61 234 At1g02920 839295 GSTF7 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.55 1e-53 210 At1g02930 839515 ATGSTF6 (GLUTATHIONE S-TRANSFERASE) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.08 3e-7 56 At5g17220 831586 ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. C.G. S.X.
0.04 1e-3 44 At3g03190 821227 ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.03 2e-2 40 At2g47730 819386 ATGSTF8 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 8) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Glycine max GmaAffx.5069.1.S1_at BM884991 bZIP transcription factor bZIP111 - 4e-4 At1g75388 CPuORF5 (Conserved peptide upstream open reading frame 5) C.G. S.X.
0.06 4e-2 38 Hordeum vulgare Contig15951_at Contig15951 - - 1e-1 At2g02930 ATGSTF3 (GLUTATHIONE S-TRANSFERASE F3) C.G. S.X.
0.04 4e-2 40 Oryza sativa Os01g0371400 NM_193841.1 - Glutathione S-transferase, C-terminal domaincontaining protein 5e-3 At3g62760 ATGSTF13 C.G. S.X.
0.15 2e-12 73 Populus trichocarpa PtpAffx.2229.2.S1_at BU880390 hypothetical protein - 3e-10 At4g02520 ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2) C.G. S.X.
0.04 8e-2 38 Triticum aestivum TaAffx.85831.1.S1_at CA619195 - - 7e-2 At4g02520 ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2) C.G. S.X.
0.07 7e-18 89 Vitis vinifera 1616933_at CB345010 hypothetical protein LOC100265903 - 1e-13 At1g02920 GSTF7 C.G. S.X.
0.03 3e-2 38 Zea mays Zm.17839.1.S1_at U12679.1 glutathione S-transferase2 - 1e-1 At4g02520 ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0009407 The chemical reactions and pathways resulting in the breakdown of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00480 Glutathione metabolism
00980 Metabolism of xenobiotics by cytochrome P450
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