CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g02540

Gene name ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At2g02540 814784 ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21) Zinc finger homeobox protein. Expressed in vascular tissue. In a yeast one hybrid system was not able to transactivate a reporter gene. S.X. H.G.
0.52 67.4 At3g61250 825297 AtMYB17 (myb domain protein 17) Member of the R2R3 factor gene family. S.X. H.G.
0.46 59.8 At2g26330 817173 ER (ERECTA) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. S.X. H.G.
0.44 57.2 At1g67040 843024 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.36 43.6 At1g44760 841040 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMO S.X. H.G.
0.33 38.1 At3g02210 821245 COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.31 33.8 At3g13510 820553 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB S.X. H.G.
0.21 15.8 At1g14440 838006 AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOBF S.X. H.G.
0.18 11.4 At1g75240 843861 AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBV S.X. H.G.
0.15 7.8 At2g16270 816123 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
197.0 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
143.8 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
141.7 99.9 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
121.8 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
117.2 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
113.3 99.9 GSM242960 Steroid day 3 (day3D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
108.5 99.9 GSM242959 Steroid day 3 (day3D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
95.4 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
88.6 99.9 GSM242955 Steroid day 1 (day1D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
85.9 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 1e-41 171 At1g14440 838006 AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOBF C.G. S.X.
0.08 8e-6 52 At2g18350 816350 AtHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.04 1e-4 48 At1g69600 843296 ZFHD1 (ZINC FINGER HOMEODOMAIN 1) Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid. C.G. S.X.
0.01 5e-4 46 At5g10550 830920 GTE2 (Global transcription factor group E 2) This gene is predicted to encode a bromodomain-containing protein. A plant line expressing RNAi constructs targeted against GTE7 shows some resistance to agrobacterium-mediated root transformation. C.G. S.X.
0.09 5e-4 46 At1g75240 843861 AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBV C.G. S.X.
0.05 2e-3 44 At5g39760 833972 AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23) F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOFVB C.G. S.X.
0.06 3e-2 40 At5g65410 836666 HB25 (HOMEOBOX PROTEIN 25) Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family. C.G. S.X.
0.01 3e-2 40 At2g19110 816428 HMA4 Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and Cd resistance, suggesting a role in Zn and Cd transport. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 5e-11 69 Glycine max Gma.7731.2.S1_at CA783548 - - 3e-19 At1g14440 AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31) C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig20674_at Contig20674 - - 5e+0 At5g30495 - C.G. S.X.
0.03 6e-2 40 Oryza sativa OsAffx.8741.1.S1_at - - - 0 C.G. S.X.
0.37 6e-38 159 Populus trichocarpa PtpAffx.216704.1.S1_s_at pmrna31655 hypothetical protein - 3e-38 At2g02540 ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21) C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.8877.1.S1_at CA618656 - - 1e+1 At3g27270 - C.G. S.X.
0.06 9e-3 40 Vitis vinifera 1617493_at CF415131 - - 4e-6 At4g24660 ATHB22 (HOMEOBOX PROTEIN 22) C.G. S.X.
0.03 5e-2 38 Zea mays Zm.3904.1.S1_at AY109271.1 seed specific protein Bn15D17A - 3e-1 At3g28500 60S acidic ribosomal protein P2 (RPP2C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0045941 Any process that activates or increases the frequency, rate or extent of transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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