CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g02340

Gene name AtPP2-B8 (Phloem protein 2-B8)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At2g02340 814765 AtPP2-B8 (Phloem protein 2-B8) F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.90 95.1 At2g25990 817140 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.90 95.1 At1g23610 838971 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.90 95.1 At1g59535 842244 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.88 94.0 At2g01310 814659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.88 94.0 At5g12450 831120 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.84 91.9 At4g02910 828141 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.84 91.9 At5g17950 831662 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.83 91.4 At1g67270 843047 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB S.X. H.G.
0.83 91.4 At2g05500 815099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
265.2 100.0 E-MEXP-509-raw-cel-829148561
248.3 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
214.8 100.0 E-MEXP-509-raw-cel-829148525
180.6 100.0 E-MEXP-509-raw-cel-829148597
176.7 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
163.8 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
134.9 99.9 E-MEXP-509-raw-cel-829148420
131.4 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
123.5 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
116.8 99.9 E-MEXP-509-raw-cel-829148348
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.61 2e-64 246 At2g02360 814767 AtPP2-B10 (Phloem protein 2-B10) F:carbohydrate binding;P:unknown;C:cellular_component unknown;PM C.G. S.X.
0.65 7e-40 165 At2g02320 814763 AtPP2-B7 (Phloem protein 2-B7) F:carbohydrate binding;P:biological_process unknown;C:unknown;P C.G. S.X.
0.38 4e-23 109 At2g02240 814755 MEE66 (maternal effect embryo arrest 66) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P C.G. S.X.
0.27 9e-15 81 At2g02350 814766 SKIP3 (SKP1 INTERACTING PARTNER 3) encodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber. C.G. S.X.
0.18 1e-13 77 At2g02310 814762 AtPP2-B6 (Phloem protein 2-B6) F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P C.G. S.X.
0.19 5e-13 75 At2g02280 814759 AtPP2-B4 (Phloem protein 2-B4) F:carbohydrate binding;P:biological_process unknown;C:unknown;P C.G. S.X.
0.27 8e-12 71 At2g02250 814756 AtPP2-B2 (Phloem protein 2-B2) F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P C.G. S.X.
0.15 5e-10 65 At2g02300 814761 AtPP2-B5 (Phloem protein 2-B5) F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P C.G. S.X.
0.01 5e-1 36 At5g26910 832749 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBMPFA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 34 Glycine max GmaAffx.46471.1.S1_at BM527454 - - 8e-1 At3g06035 unknown protein C.G. S.X.
0.02 1e+1 30 Hordeum vulgare HVSMEf0019G08r2_s_at HVSMEf0019G08r2 - - 5e-2 At4g03940 unknown protein C.G. S.X.
0.03 1e+1 32 Oryza sativa Os03g0672500 9631.m04559 - - 5e-2 At5g38980 unknown protein C.G. S.X.
0.02 4e-2 40 Populus trichocarpa Ptp.7677.1.S1_at DN489009 f-box family protein - 7e-3 At2g02240 MEE66 (maternal effect embryo arrest 66) C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.56411.1.S1_at CA652244 - - 7e+0 At4g21970 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1617046_at CF512505 hypothetical protein LOC100244517 - 2e-1 At1g68160 unknown protein C.G. S.X.
0.02 8e-1 34 Zea mays Zm.9387.1.A1_at BM268482 Hypothetical protein LOC100193233 - 4e+0 At4g09440 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage