Gene omics information

Query gene ID At2g02150
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4761.2At2g02150814746pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:endomembrane system;POMFBAS.X.H.G.
0.168.8At5g51230835198EMF2 (EMBRYONIC FLOWER 2)Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3.S.X.H.G.
0.124.9At1g68980843231pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMS.X.H.G.
0.082.3At3g09370820094MYB3R-3 (myb domain protein 3R-3)putative c-myb-like transcription factor (MYB3R3) mRNA,S.X.H.G.
0.061.4At2g14050815890MCM9F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:cellular_component unknown;MOBFAPVS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
342.8100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
115.799.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
70.399.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
64.299.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-140At4g20090827754EMB1025 (embryo defective 1025)F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBAC.G.S.X.
0.011e-140At4g04370825757pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POFMC.G.S.X.
0.011e-140At1g77340844070pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.014e-138At5g23000832364MYB37 (MYB DOMAIN PROTEIN 37)"Putative homolog of the Blind gene in tomato. Together with RAX2 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB37, regulates axillary meristem formation. RAX1 is expressed in a small central domain within the boundary zone separating SAM and leaf primordia during early leaf primordium development and is currently the earliest spatial marker for future axillary meristems. Member of the R2R3 factor gene family."C.G.S.X.
0.014e-138At4g28680828986tyrosine decarboxylase, putativeEncodes a stress-induced tyrosine decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine. Recombinant TyrDC forms tetramers.C.G.S.X.
0.014e-138At3g26932822310DRB3 (dsRNA-binding protein 3)F:double-stranded RNA binding, RNA binding;P:biological_process unknown;C:intracellular;BPMOVC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.016e-138Glycine maxGmaAffx.75861.1.S1_atBM176895--2e+0At2g22201unknown proteinC.G.S.X.
0.046e-859Hordeum vulgareContig12665_atContig12665--5e-8At2g02150pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.013e+036Oryza sativaOs12g0141500AK106134.1--7e-1At3g24850DNA bindingC.G.S.X.
0.183e-55218Populus trichocarpaPtpAffx.208119.1.S1_atpmrna16124hypothetical protein-8e-56At2g02150pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.033e-242Triticum aestivumTa.13532.1.S1_atBE443470--9e-3At2g02150pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.015e-136Vitis vinifera1609459_atCF372527hypothetical protein LOC100255436-9e-11At4g16450unknown proteinC.G.S.X.
0.017e-136Zea maysZm.13600.1.A1_atCD440740surfeit locus protein 5-2e+0At4g12900gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage