CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g02020

Gene name proton-dependent oligopeptide transport (POT) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g02020 814733 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF S.X. H.G.
0.29 30.3 At4g01860 827918 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA S.X. H.G.
0.14 6.8 At4g01220 828028 - F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;POM S.X. H.G.
0.13 5.8 At5g20200 832143 nucleoporin-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBP S.X. H.G.
0.07 1.9 At4g00790 - - - S.X. H.G.
0.01 0.2 At2g01980 814729 SOS1 (SALT OVERLY SENSITIVE 1) Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
169.4 100.0 GSM134204 Murray_3-2_D3-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
143.3 99.9 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
78.4 99.9 GSM133953 Murray_2-9_T16-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
67.3 99.8 GSM133952 Murray_2-8_T14-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
64.9 99.8 GSM134202 Murray_3-1_D1-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
61.2 99.8 GSM133951 Murray_2-7_T12-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
51.3 99.8 GSM142905 WW002_ATH1_A1-willa-CON-REP3 GSE6181 Assembly of the cell wall pectic matrix.
50.5 99.8 GSM133950 Murray_2-6_T10-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
46.3 99.8 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
46.2 99.8 GSM133948 Murray_2-4_T6-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.64 1e-85 317 At1g62200 842516 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF C.G. S.X.
0.41 2e-51 204 At2g02040 814735 PTR2 (PEPTIDE TRANSPORTER 2) Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays. C.G. S.X.
0.09 4e-12 73 At5g01180 831725 PTR5 (PEPTIDE TRANSPORTER 5) Encodes a dipeptide transporter expressed in pollen and ovules during early seed development. GFP-tagged PTR5 localizes to the plasma membrane. C.G. S.X.
0.11 2e-10 67 At3g54140 824581 PTR1 (PEPTIDE TRANSPORTER 1) Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. GFP-tagged PTR1 localizes to the plasma membrane and has 8 to 11 predicted transmembrane domains. PTR1 is expressed in a number of different vascular tissues throughout the plant based on promoter:GUS expression analysis. ptr1 mutants have a lower dry weight than wild type plants when both are grown with Pro-Ala or Ala-Ala dipeptides as their nitrogen source, suggesting that PTR1 plays a role in dipeptide uptake in the roots. Furthermore N content of ptr1 mutants is lower than that of wild type plants when grown with Pro-Ala or a mixture of dipeptides as nitrogen source C.G. S.X.
0.04 5e-2 40 At5g13400 831181 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOF C.G. S.X.
0.02 5e-2 40 At4g21680 828255 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF C.G. S.X.
0.01 5e-2 40 At1g72140 843545 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOF C.G. S.X.
0.01 8e-1 36 At1g35510 840444 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 3e-4 48 Glycine max GmaAffx.71001.1.S1_at BU545485 - - 1e-4 At2g02020 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.09 4e-7 56 Hordeum vulgare Contig7958_s_at Contig7958 - - 7e-8 At2g02040 PTR2 (PEPTIDE TRANSPORTER 2) C.G. S.X.
0.10 2e-12 75 Oryza sativa Os03g0719900 AK059693.1 - Peptide transporter 1 1e-12 At2g02020 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.07 1e-6 56 Populus trichocarpa PtpAffx.204923.1.S1_at pmrna9738 hypothetical protein - 4e-12 At5g01180 PTR5 (PEPTIDE TRANSPORTER 5) C.G. S.X.
0.12 4e-9 63 Triticum aestivum Ta.5210.3.S1_at CK206066 - - 2e-9 At2g02020 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1611896_at CB347292 hypothetical protein LOC100255930 - 1e-6 At2g02040 PTR2 (PEPTIDE TRANSPORTER 2) C.G. S.X.
0.03 9e-2 38 Zea mays Zm.18518.1.A1_at CF631091 hypothetical protein LOC100280282 - 1e-1 At2g02040 PTR2 (PEPTIDE TRANSPORTER 2) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006857 The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage