CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g02000

Gene name GAD3 (glutamate decarboxylase 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.66 80.1 At2g02000 814731 GAD3 (glutamate decarboxylase 3) F:calmodulin binding;P:carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate;C:cellular_component unknown;BFPOMAV S.X. H.G.
0.71 84.2 At3g23230 821901 ethylene-responsive factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.66 80.1 At3g25250 822119 AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1) Arabidopsis protein kinase S.X. H.G.
0.65 79.6 At3g50930 824257 BCS1 (CYTOCHROME BC1 SYNTHESIS) F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion, plastid;BOMFPAV S.X. H.G.
0.65 79.6 At5g57510 835855 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.64 78.9 At2g33710 817936 AP2 domain-containing transcription factor family protein encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. S.X. H.G.
0.64 78.9 At2g23270 816859 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.64 78.9 At1g01480 837082 ACS2 a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library. S.X. H.G.
0.63 78.1 At2g32030 817763 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOFPAVM S.X. H.G.
0.61 76.7 At4g18540 827586 unknown protein F:unknown;P:biological_process unknown;C:unknown;FPBM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
330.7 100.0 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
316.0 100.0 GSM216981 Vector_shoots_4h_GA4+DEX_repl2 GSE8741 DELLA protein direct targets in Arabidopsis
301.4 100.0 GSM216973 Vector_shoots_4h_GA4+DEX_repl1 GSE8741 DELLA protein direct targets in Arabidopsis
260.3 100.0 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
251.1 100.0 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
223.5 100.0 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
193.8 100.0 E-MEXP-1443-raw-cel-1581869863
134.0 99.9 E-MEXP-807-raw-cel-1173273144
120.9 99.9 E-MEXP-807-raw-cel-1173273252
94.7 99.9 E-NASC-76-raw-cel-1359879106
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.89 0 1848 At2g02010 814732 GAD4 (glutamate decarboxylase 4) F:calmodulin binding;P:carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate;C:cytosol, nucleus;BFPOMAV C.G. S.X.
0.45 2e-66 254 At5g17330 831599 GAD Encodes one of two isoforms of glutamate decarboxylase. C.G. S.X.
0.41 5e-45 182 At1g65960 842908 GAD2 (GLUTAMATE DECARBOXYLASE 2) glutamate decarboxylase (GAD2) C.G. S.X.
0.21 9e-19 95 At3g17760 821044 GAD5 (glutamate decarboxylase 5) F:calmodulin binding;P:carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate;C:cellular_component unknown;BFPOMAV C.G. S.X.
0.09 3e-12 73 At3g17720 821040 pyridoxal-dependent decarboxylase family protein F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, glutamate decarboxylase activity;P:amino acid metabolic process, carboxylic acid metabolic process, glutamate metabolic process;C:unknown;BFPAOM C.G. S.X.
0.02 5e-2 40 At2g47190 819332 MYB2 (MYB DOMAIN PROTEIN 2) Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin. C.G. S.X.
0.01 7e-1 36 At3g63500 825525 unknown protein F:unknown;P:unknown;C:cellular_component unknown;OMPFBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 2e-20 101 Glycine max GmaAffx.85890.1.S1_at BG044578 - - 1e-66 At3g17760 GAD5 (glutamate decarboxylase 5) C.G. S.X.
0.40 1e-40 167 Hordeum vulgare Contig1373_at Contig1373 - - 4e-40 At2g02000 GAD3 (glutamate decarboxylase 3) C.G. S.X.
0.34 5e-22 107 Oryza sativa Os03g0720300 AK120961.1 - Glutamate decarboxylase isozyme 1 (EC 4.1.1.15) 7e-76 At5g17330 GAD C.G. S.X.
0.41 4e-28 127 Populus trichocarpa PtpAffx.208836.1.S1_at pmrna17523 hypothetical protein - 5e-116 At5g17330 GAD C.G. S.X.
0.40 2e-35 151 Triticum aestivum TaAffx.129066.1.S1_at CK203703 - - 2e-46 At2g02010 GAD4 (glutamate decarboxylase 4) C.G. S.X.
0.35 2e-23 109 Vitis vinifera 1607457_at CB341759 hypothetical protein LOC100256481 - 2e-84 At5g17330 GAD C.G. S.X.
0.37 3e-38 159 Zea mays Zm.19066.1.S1_at CD975063 - - 1e-37 At2g02000 GAD3 (glutamate decarboxylase 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006536 The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid.
L GO:0019752 The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00006 Glutamine and glutamate metabolism/Nitrate assimilation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00250 Alanine, aspartate and glutamate metabolism
00410 beta-Alanine metabolism
00430 Taurine and hypotaurine metabolism
00650 Butanoate metabolism
01100 Metabolic pathways
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