Gene omics information

Query gene ID At2g02000
Gene name GAD3 (glutamate decarboxylase 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6680.1At2g02000814731GAD3 (glutamate decarboxylase 3)F:calmodulin binding;P:carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate;C:cellular_component unknown;BFPOMAVS.X.H.G.
0.7184.2At3g23230821901ethylene-responsive factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.S.X.H.G.
0.6680.1At3g25250822119AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1)Arabidopsis protein kinaseS.X.H.G.
0.6579.6At3g50930824257BCS1 (CYTOCHROME BC1 SYNTHESIS)F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion, plastid;BOMFPAVS.X.H.G.
0.6579.6At5g57510835855unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.6478.9At2g33710817936AP2 domain-containing transcription factor family proteinencodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.S.X.H.G.
0.6478.9At2g23270816859unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6478.9At1g01480837082ACS2a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library.S.X.H.G.
0.6378.1At2g32030817763GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOFPAVMS.X.H.G.
0.6176.7At4g18540827586unknown proteinF:unknown;P:biological_process unknown;C:unknown;FPBMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
330.7100.0GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
316.0100.0GSM216981Vector_shoots_4h_GA4+DEX_repl2GSE8741DELLA protein direct targets in Arabidopsis
301.4100.0GSM216973Vector_shoots_4h_GA4+DEX_repl1GSE8741DELLA protein direct targets in Arabidopsis
260.3100.0GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
251.1100.0GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
223.5100.0GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
193.8100.0E-MEXP-1443-raw-cel-1581869863
134.099.9E-MEXP-807-raw-cel-1173273144
120.999.9E-MEXP-807-raw-cel-1173273252
94.799.9E-NASC-76-raw-cel-1359879106
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8901848At2g02010814732GAD4 (glutamate decarboxylase 4)F:calmodulin binding;P:carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate;C:cytosol, nucleus;BFPOMAVC.G.S.X.
0.452e-66254At5g17330831599GADEncodes one of two isoforms of glutamate decarboxylase.C.G.S.X.
0.415e-45182At1g65960842908GAD2 (GLUTAMATE DECARBOXYLASE 2)glutamate decarboxylase (GAD2)C.G.S.X.
0.219e-1995At3g17760821044GAD5 (glutamate decarboxylase 5)F:calmodulin binding;P:carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate;C:cellular_component unknown;BFPOMAVC.G.S.X.
0.093e-1273At3g17720821040pyridoxal-dependent decarboxylase family proteinF:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, glutamate decarboxylase activity;P:amino acid metabolic process, carboxylic acid metabolic process, glutamate metabolic process;C:unknown;BFPAOMC.G.S.X.
0.025e-240At2g47190819332MYB2 (MYB DOMAIN PROTEIN 2)Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin.C.G.S.X.
0.017e-136At3g63500825525unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OMPFBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.312e-20101Glycine maxGmaAffx.85890.1.S1_atBG044578--1e-66At3g17760GAD5 (glutamate decarboxylase 5)C.G.S.X.
0.401e-40167Hordeum vulgareContig1373_atContig1373--4e-40At2g02000GAD3 (glutamate decarboxylase 3)C.G.S.X.
0.345e-22107Oryza sativaOs03g0720300AK120961.1-Glutamate decarboxylase isozyme 1 (EC 4.1.1.15)7e-76At5g17330GADC.G.S.X.
0.414e-28127Populus trichocarpaPtpAffx.208836.1.S1_atpmrna17523hypothetical protein-5e-116At5g17330GADC.G.S.X.
0.402e-35151Triticum aestivumTaAffx.129066.1.S1_atCK203703--2e-46At2g02010GAD4 (glutamate decarboxylase 4)C.G.S.X.
0.352e-23109Vitis vinifera1607457_atCB341759hypothetical protein LOC100256481-2e-84At5g17330GADC.G.S.X.
0.373e-38159Zea maysZm.19066.1.S1_atCD975063--1e-37At2g02000GAD3 (glutamate decarboxylase 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006536The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid.
LGO:0019752The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00006Link to KaPPA-View 4Glutamine and glutamate metabolism/Nitrate assimilation



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00250Link to KEGG PATHWAYAlanine, aspartate and glutamate metabolism
00410Link to KEGG PATHWAYbeta-Alanine metabolism
00430Link to KEGG PATHWAYTaurine and hypotaurine metabolism
00650Link to KEGG PATHWAYButanoate metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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