CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g01950

Gene name BRL2 (BRI1-LIKE 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g01950 814726 BRL2 (BRI1-LIKE 2) Encodes a leucine rich repeat receptor kinase and associated with provascular/procambial cells. Similar to BRI, brassinosteroid receptor protein. S.X. H.G.
0.44 57.2 At1g47670 841177 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;PMFOB S.X. H.G.
0.13 5.8 At1g64530 842761 RWP-RK domain-containing protein F:transcription factor activity;P:unknown;C:unknown;PMO S.X. H.G.
0.06 1.4 At3g53100 824476 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.04 0.9 At5g58300 835942 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
121.1 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
107.8 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
74.0 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
69.8 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
61.6 99.8 GSM184525 Stele root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
60.0 99.8 GSM184530 Stele root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
56.2 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
39.3 99.8 GSM184523 Stele root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
37.1 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
36.0 99.7 GSM184524 Stele root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 8e-15 83 At1g55610 842010 BRL1 (BRI 1 LIKE) mutant has Altered vascular cell differentiation; LRR Receptor Kinase C.G. S.X.
0.06 2e-9 65 At4g39400 830095 BRI1 (BRASSINOSTEROID INSENSITIVE 1) Encodes a plasma membrane localized leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. BRI1 ligand is brassinolide which binds at the extracellular domain. Binding results in phosphorylation of the kinase domain which activates the BRI1 protein leading to BR responses. Residue T-1049 and either S-1044 or T-1045 were essential for kinase function in vitro and normal BRI1 signaling in planta. Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome. BRI1 appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through its effects on FLC expression levels, as uncovered by double mutant analyses. This most likely occurs as a result of BRI1-dependent effects on histone acetylation, but not histone triMeH3K4 methylation, at the FLC locus. C.G. S.X.
0.01 1e-7 59 At2g19780 816497 leucine-rich repeat family protein / extensin family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA C.G. S.X.
0.05 3e-5 52 At3g13380 820538 BRL3 (BRI1-LIKE 3) Similar to BRI, brassinosteroid receptor protein. C.G. S.X.
0.01 2e-3 46 At2g31880 817746 leucine-rich repeat transmembrane protein kinase, putative Encodes a putative leucine rich repeat transmembrane protein that is expressed in response to Pseudomonas syringae. Expression of SRRLK may be required for silencing via lsiRNAs. C.G. S.X.
0.01 7e-3 44 At3g24240 822011 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.02 7e-3 44 At3g49670 824129 BAM2 (BARELY ANY MERISTEM 2) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. C.G. S.X.
0.01 7e-3 44 At1g45616 841101 AtRLP6 (Receptor Like Protein 6) F:protein binding;P:signal transduction, defense response;C:membrane;PMOBFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-19 99 Glycine max GmaAffx.74346.1.S1_at BU083922 - - 4e-10 At4g39400 BRI1 (BRASSINOSTEROID INSENSITIVE 1) C.G. S.X.
0.01 9e-4 46 Hordeum vulgare HF05G20r_at HF05G20r - - 8e-1 At3g19850 phototropic-responsive NPH3 family protein C.G. S.X.
0.04 1e-9 67 Oryza sativa Os10g0114400 9638.m00154 - Protein kinase domain containing protein 5e-10 At2g01950 BRL2 (BRI1-LIKE 2) C.G. S.X.
0.16 5e-29 131 Populus trichocarpa PtpAffx.149012.1.A1_at CK095574 hypothetical protein - 9e-30 At2g01950 BRL2 (BRI1-LIKE 2) C.G. S.X.
0.01 1e-1 40 Triticum aestivum Ta.9744.1.S1_at BQ170481 brassinosteroid-insensitive 1 - 8e-26 At4g39400 BRI1 (BRASSINOSTEROID INSENSITIVE 1) C.G. S.X.
0.05 4e-17 89 Vitis vinifera 1612516_at CB976044 hypothetical protein LOC100252647 - 8e-9 At4g39400 BRI1 (BRASSINOSTEROID INSENSITIVE 1) C.G. S.X.
0.01 5e-2 40 Zea mays Zm.17691.1.S1_at CK370234 pre-mRNA-splicing factor SF2 - 1e+1 At5g18900 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009734 The series of molecular signals generated in response to detection of auxin.
X GO:0009742 A series of molecular signals mediated by the detection of brassinosteroid.
X GO:0010305 Vascular tissue pattern formation as it occurs in the leaf of vascular plants.
X GO:0010233 The directed movement of substances, into, out of or within a cell, either in a phloem tissue or in the phloem membrane.
X GO:0010051 The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana.
C GO:0006468 The process of introducing a phosphate group on to a protein.
C GO:0007169 The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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