CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g01800

Gene name COP1-interacting protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At2g01800 814711 COP1-interacting protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVA S.X. H.G.
0.33 38.1 At4g18500 827582 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.30 32.1 At4g20290 827776 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM S.X. H.G.
0.29 30.3 At5g09340 830793 ubiquitin, putative F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFV S.X. H.G.
0.22 17.5 At5g17180 831582 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
519.4 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
362.8 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
325.3 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
289.5 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
222.1 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
200.9 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
198.2 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
192.9 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
174.0 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
172.1 100.0 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 2e-142 506 At4g00580 827945 COP1-interacting protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA C.G. S.X.
0.52 1e-115 416 At1g30060 839885 COP1-interacting protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.33 1e-47 190 At1g56100 842062 pectinesterase inhibitor domain-containing protein F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAV C.G. S.X.
0.10 9e-24 111 At2g02770 814806 holo-[acyl-carrier-protein] synthase/ magnesium ion binding F:holo-[acyl-carrier-protein] synthase activity, magnesium ion binding;P:macromolecule biosynthetic process;C:cellular_component unknown;BOPMF C.G. S.X.
0.11 1e-19 97 At4g03570 825657 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.10 9e-18 91 At4g00920 826366 COP1-interacting protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV C.G. S.X.
0.06 3e-11 69 At4g00416 828069 MBD3 Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max HgAffx.12347.1.S1_at CB375635 - - 6e-2 At1g56100 pectinesterase inhibitor domain-containing protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare EBem04_SQ002_B11_x_at EBem04_SQ002_B11 - - 9e-2 At1g30060 COP1-interacting protein-related C.G. S.X.
0.02 4e+0 34 Oryza sativa Os07g0300300 9635.m02022 - - 3e-4 At5g16830 SYP21 (SYNTAXIN OF PLANTS 21) C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.89407.1.A1_at CV226713 - - 1e-7 At3g46290 protein kinase, putative C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.111824.1.S1_at CA632670 - - 4e+0 At4g00585 unknown protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1612300_at CD719418 - - 3e-1 At2g01800 COP1-interacting protein-related C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.47.1.A1_at AI664954 hypothetical protein LOC100193281 - 8e-1 At2g37030 auxin-responsive family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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